Variant report

Variant	rs13273871
Chromosome Location	chr8:8895138-8895139
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1016512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1045528	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10503395	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11249899	1.00[ASN][1000 genomes]
rs12679527	1.00[ASN][1000 genomes]
rs13249731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13250674	0.81[EUR][1000 genomes]
rs13250919	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13258661	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13260103	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13261370	0.83[EUR][1000 genomes]
rs13263480	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13273769	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13274157	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13276286	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13276537	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13281029	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1430931	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17155162	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2044389	0.85[EUR][1000 genomes]
rs28393746	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28405982	1.00[ASN][1000 genomes]
rs28516774	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28534948	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28812315	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2956245	1.00[ASN][1000 genomes]
rs2979269	0.81[YRI][hapmap]
rs34111588	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34334157	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34391124	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34412730	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34418902	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34712023	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34752993	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34854114	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35227233	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35616716	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35808561	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3958881	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4841088	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4841092	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55634245	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55696609	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60519586	1.00[ASN][1000 genomes]
rs66483157	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66869483	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67139167	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67259528	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67434672	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67575865	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67958495	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs68043139	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6985908	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6989707	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990134	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6993811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6994214	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6994551	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7008080	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7012302	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71514525	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71514527	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73195799	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73197711	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73197712	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7387683	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7816149	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7816450	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9650628	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890331	chr8:8093240-8971100	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv917117	chr8:8621658-9313799	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv831229	chr8:8751523-8926235	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv1022468	chr8:8857853-9209167	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv539460	chr8:8857853-9209167	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv817373	chr8:8857854-9361049	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:8861400-8907000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:8861800-8897800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:8861800-8915600	Weak transcription	Pancreas	Pancrea
4	chr8:8871200-8900000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:8875200-8897200	Weak transcription	Gastric	stomach
6	chr8:8875400-8897000	Weak transcription	Lung	lung
7	chr8:8875400-8901200	Weak transcription	Thymus	Thymus
8	chr8:8876400-8898000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr8:8877000-8895600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr8:8877000-8903400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr8:8877200-8895400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:8881000-8900400	Weak transcription	NH-A	brain
13	chr8:8882200-8896400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:8883200-8898400	Weak transcription	Fetal Kidney	kidney
15	chr8:8883600-8902400	Weak transcription	Adipose Nuclei	Adipose
16	chr8:8883800-8895400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr8:8883800-8897800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr8:8883800-8906000	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr8:8884000-8900200	Weak transcription	Left Ventricle	heart
20	chr8:8884000-8906200	Weak transcription	Psoas Muscle	Psoas
21	chr8:8884600-8895200	Weak transcription	Liver	Liver
22	chr8:8885800-8895800	Weak transcription	Fetal Lung	lung
23	chr8:8887000-8897400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr8:8887800-8897600	Weak transcription	GM12878-XiMat	blood
25	chr8:8888400-8910800	Weak transcription	Hela-S3	cervix
26	chr8:8890400-8897400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr8:8890800-8895800	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr8:8890800-8895800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr8:8890800-8897400	Weak transcription	Primary hematopoietic stem cells	blood
30	chr8:8890800-8897600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr8:8891000-8914800	Weak transcription	Fetal Stomach	stomach
32	chr8:8891200-8895400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr8:8891200-8897000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr8:8891200-8897600	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr8:8891200-8897800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr8:8891200-8897800	Weak transcription	Fetal Muscle Leg	muscle
37	chr8:8891400-8897000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr8:8891400-8897000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr8:8891400-8897600	Weak transcription	Placenta	Placenta
40	chr8:8891400-8897600	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr8:8891400-8915200	Weak transcription	K562	blood
42	chr8:8892000-8895200	Weak transcription	A549	lung
43	chr8:8892000-8901800	Weak transcription	Primary B cells from cord blood	blood
44	chr8:8892800-8897600	Weak transcription	Stomach Mucosa	stomach
45	chr8:8892800-8897800	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr8:8893000-8895200	Weak transcription	Fetal Intestine Large	intestine
47	chr8:8893600-8898000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr8:8893800-8895400	Enhancers	Fetal Brain Male	brain
49	chr8:8893800-8913800	Weak transcription	Primary T cells from cord blood	blood
50	chr8:8894000-8897800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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