Variant report

Variant	rs6989707
Chromosome Location	chr8:8878512-8878513
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:8873907..8877820-chr8:8877960..8882381,6	K562	blood:
2	chr8:8865815..8868518-chr8:8878395..8880602,2	K562	blood:

Extended variants
information (count: 75 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1016512	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1045528	0.92[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10503395	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11249899	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12679527	1.00[ASN][1000 genomes]
rs13249731	0.93[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13250674	0.80[EUR][1000 genomes]
rs13250919	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.92[MKK][hapmap];0.87[TSI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13258661	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13260103	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13261370	0.82[EUR][1000 genomes]
rs13263480	0.93[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13273769	0.92[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13273871	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13274157	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13276286	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13276537	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13281029	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1430931	0.93[CEU][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17155162	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2044389	0.85[EUR][1000 genomes]
rs28393746	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28405982	1.00[ASN][1000 genomes]
rs28516774	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28534948	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28812315	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2956245	1.00[ASN][1000 genomes]
rs34111588	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34334157	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34391124	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34412730	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34418902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34712023	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34752993	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34854114	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35227233	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35616716	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35808561	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3958881	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4841088	0.93[CEU][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4841092	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55634245	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55696609	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60519586	1.00[ASN][1000 genomes]
rs66483157	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66869483	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67139167	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67259528	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67434672	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67575865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67958495	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs68043139	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6985908	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6990134	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6993811	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6994214	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6994551	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7008080	0.93[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7012302	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71514525	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71514527	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73195799	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73197711	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73197712	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7387683	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7816149	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7816450	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9650628	0.93[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890331	chr8:8093240-8971100	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv917117	chr8:8621658-9313799	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv831229	chr8:8751523-8926235	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv610205	chr8:8799111-8891644	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	n/a
5	nsv1022468	chr8:8857853-9209167	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv539460	chr8:8857853-9209167	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv817373	chr8:8857854-9361049	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6989707	PPP1R3B	cis	parietal	SCAN

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:8861200-8892400	Weak transcription	Aorta	Aorta
2	chr8:8861400-8907000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr8:8861600-8878600	Weak transcription	Colon Smooth Muscle	Colon
4	chr8:8861600-8885600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:8861800-8881800	Weak transcription	Fetal Kidney	kidney
6	chr8:8861800-8883400	Weak transcription	Spleen	Spleen
7	chr8:8861800-8883600	Weak transcription	Small Intestine	intestine
8	chr8:8861800-8885200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr8:8861800-8887200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr8:8861800-8887400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr8:8861800-8890000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr8:8861800-8891400	Weak transcription	Brain Angular Gyrus	brain
13	chr8:8861800-8891800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr8:8861800-8892000	Weak transcription	Brain Anterior Caudate	brain
15	chr8:8861800-8892200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr8:8861800-8892200	Weak transcription	Ovary	ovary
17	chr8:8861800-8893800	Weak transcription	Fetal Brain Male	brain
18	chr8:8861800-8897800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr8:8861800-8915600	Weak transcription	Pancreas	Pancrea
20	chr8:8865400-8878800	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr8:8865400-8886000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr8:8865800-8879600	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr8:8869000-8880600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr8:8870000-8879000	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr8:8870200-8883600	Weak transcription	Stomach Mucosa	stomach
26	chr8:8870600-8892200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr8:8871200-8900000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr8:8871400-8892800	Weak transcription	HSMMtube	muscle
29	chr8:8871800-8887200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr8:8871800-8894400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr8:8872000-8878600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr8:8872000-8880200	Weak transcription	Rectal Smooth Muscle	rectum
33	chr8:8872000-8881800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr8:8872000-8891200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr8:8872400-8887200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr8:8872600-8881000	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr8:8873000-8878600	Strong transcription	K562	blood
38	chr8:8873200-8882200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr8:8873600-8878800	Strong transcription	Liver	Liver
40	chr8:8873600-8880600	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr8:8873600-8882200	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr8:8873800-8878600	Strong transcription	H1 Cell Line	embryonic stem cell
43	chr8:8873800-8879200	Strong transcription	Primary T cells from cord blood	blood
44	chr8:8873800-8880000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr8:8873800-8880400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr8:8873800-8881800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr8:8873800-8882000	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr8:8873800-8884400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr8:8874200-8879200	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr8:8874200-8879400	Strong transcription	Placenta	Placenta

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