Variant report

Variant	rs13274524
Chromosome Location	chr8:121808232-121808233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10086173	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10087417	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10100219	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13256614	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13266005	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13267880	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13269664	1.00[CEU][hapmap]
rs28542435	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28608098	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34131072	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34261625	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34274533	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34521781	0.98[EUR][1000 genomes]
rs35855379	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4327892	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4345604	1.00[CEU][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4509376	1.00[CEU][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57356692	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67852639	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67932638	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6984228	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6988083	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6988816	1.00[CEU][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6993049	1.00[CEU][hapmap]
rs6996312	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7010152	1.00[CEU][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7010904	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7010935	1.00[CEU][hapmap]
rs7011039	1.00[CEU][hapmap]
rs73325120	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016172	chr8:121679590-121929916	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv891422	chr8:121680857-121819478	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2757289	chr8:121765701-121828919	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2759640	chr8:121765701-121828919	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13274524	SCD	trans	lymphoblastoid	RTeQTL

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121798600-121819400	Weak transcription	Fetal Stomach	stomach
2	chr8:121799000-121820800	Weak transcription	Aorta	Aorta
3	chr8:121799200-121808400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr8:121799200-121808800	Weak transcription	Esophagus	oesophagus
5	chr8:121799200-121819600	Weak transcription	Lung	lung
6	chr8:121799400-121810200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:121799400-121811200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr8:121799400-121820800	Weak transcription	Fetal Intestine Small	intestine
9	chr8:121801600-121820400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr8:121802000-121816400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr8:121802600-121809600	Weak transcription	Primary B cells from cord blood	blood
12	chr8:121802600-121814600	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr8:121802800-121813800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr8:121803200-121814600	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr8:121804800-121809000	Strong transcription	HepG2	liver
16	chr8:121804800-121820800	Weak transcription	Fetal Intestine Large	intestine
17	chr8:121805000-121813800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr8:121805200-121808400	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr8:121805600-121811200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr8:121805600-121814200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr8:121805600-121816000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr8:121805600-121821200	Weak transcription	Fetal Muscle Trunk	muscle
23	chr8:121805800-121809600	Weak transcription	Primary T cells from cord blood	blood
24	chr8:121805800-121811000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr8:121805800-121815400	Weak transcription	HSMMtube	muscle
26	chr8:121805800-121816600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr8:121806600-121810000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr8:121806600-121816200	Weak transcription	Fetal Kidney	kidney
29	chr8:121806800-121810200	Weak transcription	Adipose Nuclei	Adipose
30	chr8:121806800-121819800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr8:121807000-121808600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr8:121807200-121810000	Weak transcription	Primary B cells from peripheral blood	blood
33	chr8:121807800-121808400	Strong transcription	Liver	Liver
34	chr8:121807800-121808600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr8:121808000-121808800	Enhancers	H1 Cell Line	embryonic stem cell
36	chr8:121808000-121809000	Strong transcription	NHLF	lung
37	chr8:121808000-121809200	Enhancers	H9 Cell Line	embryonic stem cell
38	chr8:121808000-121810400	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr8:121808200-121808400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr8:121808200-121808600	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr8:121808200-121808800	Weak transcription	Gastric	stomach
42	chr8:121808200-121809000	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr8:121808200-121809800	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr8:121808200-121810000	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr8:121808200-121810000	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr8:121808200-121810200	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr8:121808200-121820600	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links