Variant report

Variant	rs73325120
Chromosome Location	chr8:121799011-121799012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10086173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10087417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10100219	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13256614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13266005	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13267880	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13274524	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28542435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28608098	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34131072	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34261625	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34274533	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34521781	0.98[EUR][1000 genomes]
rs35855379	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4327892	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4345604	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4509376	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57356692	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67852639	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67932638	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6984228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6988083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6988816	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6996312	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7010152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7010904	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016172	chr8:121679590-121929916	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv891422	chr8:121680857-121819478	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2757289	chr8:121765701-121828919	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2759640	chr8:121765701-121828919	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121795000-121799200	Enhancers	Liver	Liver
2	chr8:121795800-121799200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr8:121795800-121799200	Enhancers	Psoas Muscle	Psoas
4	chr8:121795800-121805200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr8:121796600-121799200	Enhancers	Primary T cells fromperipheralblood	blood
6	chr8:121796600-121799200	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr8:121796600-121799400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
8	chr8:121796600-121799400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr8:121796600-121799400	Enhancers	NHDF-Ad	bronchial
10	chr8:121796800-121799200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:121796800-121799200	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr8:121796800-121799200	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr8:121796800-121799400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr8:121797000-121799200	Enhancers	Adipose Nuclei	Adipose
15	chr8:121797200-121799200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr8:121797200-121799400	Enhancers	H1 Cell Line	embryonic stem cell
17	chr8:121797200-121799400	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr8:121797200-121799400	ZNF genes & repeats	Fetal Intestine Small	intestine
19	chr8:121797400-121799200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr8:121797400-121799200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr8:121797400-121799200	Enhancers	Lung	lung
22	chr8:121797400-121799400	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr8:121797400-121799400	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr8:121797600-121799200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr8:121797600-121799200	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr8:121797600-121799200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr8:121797600-121799200	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr8:121797600-121799400	Genic enhancers	HepG2	liver
29	chr8:121797800-121799200	Enhancers	H9 Cell Line	embryonic stem cell
30	chr8:121797800-121799200	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr8:121797800-121799200	Enhancers	Esophagus	oesophagus
32	chr8:121798000-121799200	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr8:121798000-121799200	Enhancers	Muscle Satellite Cultured Cells	--
34	chr8:121798000-121799400	Enhancers	Osteobl	bone
35	chr8:121798200-121799200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
36	chr8:121798400-121799200	ZNF genes & repeats	Fetal Intestine Large	intestine
37	chr8:121798600-121799800	Weak transcription	Fetal Lung	lung
38	chr8:121798600-121819400	Weak transcription	Fetal Stomach	stomach
39	chr8:121798800-121799200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr8:121798800-121799200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr8:121798800-121799200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr8:121798800-121799200	Enhancers	Hela-S3	cervix
43	chr8:121798800-121799200	Genic enhancers	HSMM	muscle
44	chr8:121799000-121799200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr8:121799000-121799200	Enhancers	Pancreas	Pancrea
46	chr8:121799000-121799400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr8:121799000-121799400	ZNF genes & repeats	Fetal Muscle Leg	muscle
48	chr8:121799000-121799400	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr8:121799000-121799400	Enhancers	Monocytes-CD14+_RO01746	blood
50	chr8:121799000-121799400	Enhancers	NHLF	lung

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