Variant report

Variant	rs13276470
Chromosome Location	chr8:117865509-117865510
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:117863976..117865833-chr8:117886990..117888804,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164754	Chromatin interaction
ENSG00000264875	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10094918	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10107209	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10110234	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1111277	0.85[AFR][1000 genomes]
rs1348796	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1348799	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16888879	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16888927	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16888997	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16889014	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16889040	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17426067	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17664276	0.84[AFR][1000 genomes]
rs28646042	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28705030	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28877615	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34000422	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6987652	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv831434	chr8:117784467-117977825	Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117852400-117877000	Weak transcription	Fetal Intestine Small	intestine
2	chr8:117853000-117881400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:117854800-117875000	Strong transcription	Dnd41	blood
4	chr8:117855200-117870400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr8:117855400-117872800	Strong transcription	Stomach Smooth Muscle	stomach
6	chr8:117856000-117870600	Strong transcription	Rectal Mucosa Donor 31	rectum
7	chr8:117856000-117872800	Strong transcription	Fetal Intestine Large	intestine
8	chr8:117856000-117873000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr8:117856000-117874000	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr8:117856200-117869400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr8:117856200-117872000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr8:117856200-117873800	Strong transcription	Fetal Muscle Trunk	muscle
13	chr8:117856200-117877000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr8:117856400-117873000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr8:117856400-117873000	Strong transcription	Liver	Liver
16	chr8:117856400-117875200	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr8:117856400-117878400	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr8:117856400-117879000	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr8:117856400-117882000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr8:117856600-117867000	Strong transcription	ES-I3 Cell Line	embryonic stem cell
21	chr8:117856600-117875400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr8:117856600-117875800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
23	chr8:117856800-117874200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr8:117856800-117875000	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr8:117856800-117877600	Strong transcription	HSMM	muscle
26	chr8:117856800-117878800	Strong transcription	Fetal Thymus	thymus
27	chr8:117857000-117879200	Strong transcription	Hela-S3	cervix
28	chr8:117857200-117875800	Strong transcription	HUVEC	blood vessel
29	chr8:117857200-117878000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr8:117857400-117872800	Strong transcription	Fetal Muscle Leg	muscle
31	chr8:117857400-117875200	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr8:117857400-117877600	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr8:117857600-117871600	Strong transcription	NH-A	brain
34	chr8:117857600-117873400	Strong transcription	Placenta	Placenta
35	chr8:117857600-117875200	Strong transcription	A549	lung
36	chr8:117857600-117878400	Strong transcription	Duodenum Mucosa	Duodenum
37	chr8:117857800-117875600	Strong transcription	HMEC	breast
38	chr8:117858000-117870800	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr8:117858000-117875200	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr8:117858000-117879000	Strong transcription	Primary B cells from peripheral blood	blood
41	chr8:117858200-117878400	Strong transcription	Primary B cells from cord blood	blood
42	chr8:117858400-117870400	Strong transcription	Adipose Nuclei	Adipose
43	chr8:117858400-117871000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr8:117858400-117871000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr8:117858400-117875000	Strong transcription	Primary T helper cells PMA-I stimulated	--
46	chr8:117858400-117875800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr8:117858600-117870400	Strong transcription	Left Ventricle	heart
48	chr8:117858600-117873400	Strong transcription	Fetal Lung	lung
49	chr8:117858600-117873400	Strong transcription	HepG2	liver
50	chr8:117858600-117874200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

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