Variant report

Variant	rs1348796
Chromosome Location	chr8:117899489-117899490
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10094918	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10107209	0.95[CEU][hapmap];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10110234	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1111277	0.81[AFR][1000 genomes]
rs13276470	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1348799	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16888879	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16888927	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16888997	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16889014	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16889040	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17426067	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17664276	0.93[AFR][1000 genomes]
rs28646042	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28705030	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28877615	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34000422	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6987652	0.93[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv831434	chr8:117784467-117977825	Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117899400-117899600	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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