Variant report

Variant	rs13277246
Chromosome Location	chr8:59026318-59026319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr8:59026013-59026402	HL-60	blood:	n/a	n/a
2	POLR2A	chr8:59025741-59026399	HL-60	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000242595	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11998684	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs12156321	0.93[CEU][hapmap];0.85[CHB][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13263290	0.85[CHB][hapmap]
rs13263507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13266191	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13271022	0.84[MEX][hapmap]
rs13271652	0.92[CEU][hapmap];0.82[CHD][hapmap];0.81[MEX][hapmap];0.83[TSI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13273891	1.00[CHB][hapmap]
rs16922941	0.85[CHB][hapmap]
rs16922990	1.00[CHB][hapmap]
rs17175390	0.93[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.97[ASN][1000 genomes]
rs17175804	0.93[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17175965	1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17176389	0.93[CEU][hapmap];0.81[MEX][hapmap];0.84[AMR][1000 genomes]
rs17254739	1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[CHD][hapmap];0.90[GIH][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35086012	0.97[ASN][1000 genomes]
rs35134040	0.83[ASN][1000 genomes]
rs35786251	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35856598	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6471684	0.83[TSI][hapmap]
rs6984700	1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6988260	0.85[CHB][hapmap]
rs6991555	0.85[CHB][hapmap]
rs6997924	1.00[CHB][hapmap]
rs7010934	1.00[CHB][hapmap]
rs72660392	0.94[ASN][1000 genomes]
rs72662407	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7823853	1.00[CHB][hapmap]
rs7835676	1.00[CHB][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59011000-59031600	Weak transcription	Liver	Liver
2	chr8:59011400-59028400	Weak transcription	Placenta	Placenta
3	chr8:59011400-59028800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr8:59011400-59035400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr8:59011600-59029400	Weak transcription	Adipose Nuclei	Adipose
6	chr8:59011600-59030800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr8:59011600-59031800	Weak transcription	Gastric	stomach
8	chr8:59011600-59044800	Weak transcription	Spleen	Spleen
9	chr8:59014800-59028200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr8:59014800-59034400	Weak transcription	Fetal Brain Female	brain
11	chr8:59015000-59028600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr8:59015200-59058200	Weak transcription	Aorta	Aorta
13	chr8:59015400-59036400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr8:59015400-59037000	Weak transcription	Psoas Muscle	Psoas
15	chr8:59015600-59030000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr8:59016600-59033600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:59016600-59046200	Weak transcription	Fetal Brain Male	brain
18	chr8:59016800-59029600	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr8:59019400-59036800	Weak transcription	Fetal Kidney	kidney
20	chr8:59020200-59032200	Weak transcription	Brain Germinal Matrix	brain
21	chr8:59020600-59032600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr8:59020800-59027200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr8:59021200-59027200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr8:59021200-59028000	Weak transcription	Lung	lung
25	chr8:59021400-59027200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr8:59021400-59028200	Weak transcription	Left Ventricle	heart
27	chr8:59021400-59028400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr8:59021600-59033400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr8:59021800-59040600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr8:59021800-59044200	Weak transcription	Fetal Lung	lung
31	chr8:59022400-59027400	Weak transcription	Fetal Stomach	stomach
32	chr8:59022400-59028600	Weak transcription	Right Atrium	heart
33	chr8:59022400-59050000	Weak transcription	Ovary	ovary
34	chr8:59022800-59033400	Weak transcription	Fetal Muscle Trunk	muscle
35	chr8:59025600-59026400	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr8:59025600-59032000	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr8:59025800-59026800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr8:59025800-59028000	Enhancers	HSMMtube	muscle
39	chr8:59025800-59029000	Enhancers	HSMM	muscle
40	chr8:59025800-59034200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr8:59026000-59027000	Weak transcription	NHDF-Ad	bronchial
42	chr8:59026000-59050600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr8:59026200-59026600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr8:59026200-59027200	Enhancers	Fetal Heart	heart
45	chr8:59026200-59028400	Strong transcription	Fetal Muscle Leg	muscle
46	chr8:59026200-59033600	Weak transcription	Right Ventricle	heart
47	chr8:59026200-59049800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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