Variant report

Variant	rs13263290
Chromosome Location	chr8:58961400-58961401
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:58959136..58960793-chr8:58960961..58963378,2	K562	blood:
2	chr8:58960183..58961869-chr8:58981699..58984005,2	MCF-7	breast:
3	chr8:58918597..58920441-chr8:58959526..58962470,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169122	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11998684	0.85[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12155558	1.00[ASN][1000 genomes]
rs12156321	1.00[CHB][hapmap]
rs13263507	0.82[CHB][hapmap]
rs13271652	1.00[CHB][hapmap]
rs13271679	0.98[EUR][1000 genomes]
rs13273891	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs13277246	0.85[CHB][hapmap]
rs16922941	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922990	0.85[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs17175390	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs17175804	1.00[CHB][hapmap]
rs17175965	1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs17239283	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs17239590	1.00[CEU][hapmap];0.85[JPT][hapmap];0.96[EUR][1000 genomes]
rs17254739	1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs17835765	1.00[CEU][hapmap];0.85[JPT][hapmap];0.98[EUR][1000 genomes]
rs34040020	1.00[EUR][1000 genomes]
rs35055955	0.96[EUR][1000 genomes]
rs35086012	0.82[ASN][1000 genomes]
rs35160448	0.98[EUR][1000 genomes]
rs35338825	1.00[EUR][1000 genomes]
rs35350559	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35623322	0.96[EUR][1000 genomes]
rs35719782	0.98[EUR][1000 genomes]
rs35786251	0.85[ASN][1000 genomes]
rs35856598	0.85[ASN][1000 genomes]
rs35979674	1.00[ASN][1000 genomes]
rs6984700	1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs6988260	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6991555	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6997924	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs7000317	1.00[ASN][1000 genomes]
rs7010934	0.85[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs71519494	0.98[EUR][1000 genomes]
rs7823853	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs7835676	0.85[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58935600-58988800	Weak transcription	Aorta	Aorta
2	chr8:58944600-58963000	Weak transcription	Stomach Mucosa	stomach
3	chr8:58944800-58962800	Weak transcription	Gastric	stomach
4	chr8:58949400-58966800	Weak transcription	Liver	Liver
5	chr8:58951800-58963000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:58951800-58963200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr8:58952000-58964200	Weak transcription	Osteobl	bone
8	chr8:58952200-58962800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr8:58952200-58986400	Weak transcription	Adipose Nuclei	Adipose
10	chr8:58952800-58979600	Weak transcription	HSMMtube	muscle
11	chr8:58954200-58962800	Weak transcription	Lung	lung
12	chr8:58954400-58962800	Weak transcription	Right Ventricle	heart
13	chr8:58954400-58973200	Weak transcription	Psoas Muscle	Psoas
14	chr8:58955000-58963000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr8:58955200-58974400	Weak transcription	Fetal Brain Male	brain
16	chr8:58955600-58962600	Weak transcription	Fetal Brain Female	brain
17	chr8:58956000-58963000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr8:58956000-58969400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr8:58958000-58964000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr8:58958000-58969400	Weak transcription	HSMM	muscle
21	chr8:58958000-58979000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr8:58958200-58968000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr8:58958800-58962800	Weak transcription	Fetal Muscle Trunk	muscle
24	chr8:58959600-58964600	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr8:58960000-58961600	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr8:58960000-58963800	Enhancers	Fetal Kidney	kidney
27	chr8:58960200-58961400	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr8:58960200-58961600	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr8:58960400-58961400	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr8:58960400-58961400	Enhancers	NHDF-Ad	bronchial
31	chr8:58960400-58962000	Enhancers	Fetal Lung	lung
32	chr8:58960400-58963200	Enhancers	Colon Smooth Muscle	Colon
33	chr8:58960600-58961400	Enhancers	H1 Cell Line	embryonic stem cell
34	chr8:58960600-58961400	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr8:58960600-58961400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr8:58960600-58961800	Enhancers	Brain Hippocampus Middle	brain
37	chr8:58960600-58963000	Enhancers	Fetal Stomach	stomach
38	chr8:58960800-58961400	Enhancers	Pancreatic Islets	Pancreatic Islet
39	chr8:58960800-58961400	Enhancers	Small Intestine	intestine
40	chr8:58960800-58961600	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr8:58960800-58962000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr8:58960800-58963000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr8:58960800-58963400	Weak transcription	NHLF	lung
44	chr8:58960800-58963800	Weak transcription	HepG2	liver
45	chr8:58960800-58964000	Enhancers	Fetal Heart	heart
46	chr8:58960800-58964200	Enhancers	Ovary	ovary
47	chr8:58961000-58961600	Enhancers	Brain Germinal Matrix	brain
48	chr8:58961000-58962200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr8:58961000-58962800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr8:58961200-58961400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links