Variant report

Variant	rs17239590
Chromosome Location	chr8:58939799-58939800
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11998684	0.85[JPT][hapmap]
rs13263290	1.00[CEU][hapmap];0.85[JPT][hapmap];0.96[EUR][1000 genomes]
rs13271679	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16922941	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs17176389	1.00[JPT][hapmap]
rs17239283	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17835765	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34040020	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35055955	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35160448	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35338825	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35623322	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35719782	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59034196	0.87[AFR][1000 genomes]
rs59980825	0.80[AFR][1000 genomes]
rs6991555	1.00[CEU][hapmap];0.85[JPT][hapmap];0.96[EUR][1000 genomes]
rs71519494	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73681729	0.82[AFR][1000 genomes]
rs7835676	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58908600-58942800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr8:58909400-58943000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr8:58924400-58946400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:58926600-58942000	Weak transcription	HSMM	muscle
5	chr8:58927000-58943000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr8:58927000-58948000	Weak transcription	Fetal Brain Male	brain
7	chr8:58929400-58943200	Weak transcription	Fetal Stomach	stomach
8	chr8:58929400-58944000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr8:58929400-58944400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr8:58929800-58942600	Weak transcription	Fetal Brain Female	brain
11	chr8:58930200-58941400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr8:58930400-58941400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:58935000-58948600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:58935000-58950200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr8:58935600-58941200	Weak transcription	Fetal Muscle Leg	muscle
16	chr8:58935600-58988800	Weak transcription	Aorta	Aorta
17	chr8:58936200-58941400	Weak transcription	Liver	Liver
18	chr8:58936200-58944600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr8:58936400-58941400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr8:58936400-58941800	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr8:58936400-58942200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr8:58936400-58943000	Weak transcription	Fetal Lung	lung
23	chr8:58936400-58945200	Weak transcription	Fetal Kidney	kidney
24	chr8:58936600-58943400	Weak transcription	Adipose Nuclei	Adipose
25	chr8:58937600-58942800	Weak transcription	HSMMtube	muscle
26	chr8:58937600-58943000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr8:58938000-58941400	Weak transcription	Lung	lung
28	chr8:58938000-58943200	Weak transcription	Left Ventricle	heart
29	chr8:58938000-58943400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr8:58938000-58943400	Weak transcription	Pancreas	Pancrea
31	chr8:58938200-58941400	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr8:58938200-58941400	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr8:58938200-58943000	Weak transcription	Right Atrium	heart
34	chr8:58938400-58943200	Weak transcription	Right Ventricle	heart
35	chr8:58938600-58940800	Weak transcription	Ovary	ovary
36	chr8:58938600-58941400	Weak transcription	Colon Smooth Muscle	Colon
37	chr8:58938600-58941400	Weak transcription	Spleen	Spleen
38	chr8:58938800-58941400	Weak transcription	Fetal Heart	heart
39	chr8:58939600-58941400	Weak transcription	Psoas Muscle	Psoas

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