Variant report

Variant	rs73681729
Chromosome Location	chr8:58929037-58929038
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:58928682..58930900-chr8:58937959..58939747,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16922983	1.00[EUR][1000 genomes]
rs17239590	0.82[AFR][1000 genomes]
rs28638177	1.00[EUR][1000 genomes]
rs55808340	1.00[EUR][1000 genomes]
rs56283627	1.00[EUR][1000 genomes]
rs59034196	0.89[AFR][1000 genomes]
rs59980825	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60729123	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60778851	0.85[AFR][1000 genomes]
rs6471674	1.00[EUR][1000 genomes]
rs6471677	1.00[EUR][1000 genomes]
rs6471678	1.00[EUR][1000 genomes]
rs7003864	1.00[EUR][1000 genomes]
rs73681724	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73681726	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73681728	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73681746	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73681748	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73681749	1.00[EUR][1000 genomes]
rs73681772	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7835069	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58908600-58942800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr8:58908800-58929200	Weak transcription	Brain Substantia Nigra	brain
3	chr8:58909400-58943000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr8:58916400-58929200	Weak transcription	Brain Hippocampus Middle	brain
5	chr8:58916400-58934600	Weak transcription	Brain Anterior Caudate	brain
6	chr8:58916600-58929200	Weak transcription	Osteobl	bone
7	chr8:58916800-58929200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:58921600-58934200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr8:58921800-58937400	Weak transcription	HSMMtube	muscle
10	chr8:58923400-58937200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr8:58924400-58946400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:58924600-58929200	Weak transcription	Ovary	ovary
13	chr8:58926600-58934400	Weak transcription	Aorta	Aorta
14	chr8:58926600-58942000	Weak transcription	HSMM	muscle
15	chr8:58926800-58937600	Weak transcription	Spleen	Spleen
16	chr8:58927000-58943000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr8:58927000-58948000	Weak transcription	Fetal Brain Male	brain
18	chr8:58927200-58929200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr8:58927200-58932000	Weak transcription	Fetal Lung	lung
20	chr8:58927200-58934400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr8:58928000-58929600	Enhancers	Muscle Satellite Cultured Cells	--
22	chr8:58928200-58929200	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr8:58928600-58929800	Enhancers	Liver	Liver
24	chr8:58928600-58930400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr8:58928800-58929400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr8:58928800-58929400	Enhancers	Brain Germinal Matrix	brain
27	chr8:58928800-58929400	Enhancers	Psoas Muscle	Psoas
28	chr8:58928800-58929600	Enhancers	Colon Smooth Muscle	Colon
29	chr8:58928800-58929600	Enhancers	Esophagus	oesophagus
30	chr8:58928800-58929600	Enhancers	Lung	lung
31	chr8:58928800-58929600	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr8:58928800-58929600	Enhancers	Stomach Smooth Muscle	stomach
33	chr8:58928800-58929800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr8:58928800-58929800	Genic enhancers	Fetal Muscle Leg	muscle
35	chr8:58928800-58929800	Enhancers	Right Ventricle	heart
36	chr8:58928800-58930000	Enhancers	Left Ventricle	heart
37	chr8:58928800-58930200	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr8:58929000-58929200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
39	chr8:58929000-58929200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr8:58929000-58929200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr8:58929000-58929200	Genic enhancers	Fetal Stomach	stomach
42	chr8:58929000-58929400	Enhancers	H1 Cell Line	embryonic stem cell
43	chr8:58929000-58929400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr8:58929000-58929400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr8:58929000-58929400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr8:58929000-58929400	Genic enhancers	Fetal Brain Female	brain
47	chr8:58929000-58929400	Enhancers	Fetal Muscle Trunk	muscle
48	chr8:58929000-58929400	Enhancers	Pancreas	Pancrea
49	chr8:58929000-58929600	Enhancers	Adipose Nuclei	Adipose
50	chr8:58929000-58929600	Enhancers	Fetal Heart	heart

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