Variant report

Variant	rs73681726
Chromosome Location	chr8:58918196-58918197
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16922983	1.00[EUR][1000 genomes]
rs28638177	1.00[EUR][1000 genomes]
rs55808340	1.00[EUR][1000 genomes]
rs56283627	1.00[EUR][1000 genomes]
rs59980825	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60729123	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60778851	0.86[AFR][1000 genomes]
rs6471674	1.00[EUR][1000 genomes]
rs6471677	1.00[EUR][1000 genomes]
rs6471678	1.00[EUR][1000 genomes]
rs7003864	1.00[EUR][1000 genomes]
rs73681724	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73681728	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73681729	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73681746	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73681748	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73681749	1.00[EUR][1000 genomes]
rs73681772	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7835069	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58908200-58919600	Weak transcription	Gastric	stomach
2	chr8:58908400-58919400	Weak transcription	Placenta	Placenta
3	chr8:58908400-58919400	Weak transcription	Pancreas	Pancrea
4	chr8:58908400-58919600	Weak transcription	Lung	lung
5	chr8:58908400-58920000	Weak transcription	Spleen	Spleen
6	chr8:58908400-58926400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:58908400-58928800	Weak transcription	Esophagus	oesophagus
8	chr8:58908400-58929000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr8:58908600-58942800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr8:58908800-58929200	Weak transcription	Brain Substantia Nigra	brain
11	chr8:58909200-58919600	Weak transcription	Brain Angular Gyrus	brain
12	chr8:58909400-58920000	Weak transcription	Stomach Mucosa	stomach
13	chr8:58909400-58928800	Weak transcription	Fetal Intestine Large	intestine
14	chr8:58909400-58943000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr8:58909800-58919800	Weak transcription	Right Ventricle	heart
16	chr8:58909800-58921600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr8:58910000-58919200	Weak transcription	Aorta	Aorta
18	chr8:58913400-58929000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr8:58914200-58929000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr8:58914400-58918200	ZNF genes & repeats	Fetal Brain Male	brain
21	chr8:58914600-58918200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr8:58914600-58924600	Strong transcription	HSMM	muscle
23	chr8:58915000-58918200	ZNF genes & repeats	Fetal Brain Female	brain
24	chr8:58915000-58918200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
25	chr8:58916000-58919800	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr8:58916000-58924200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr8:58916200-58924000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr8:58916200-58926400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr8:58916400-58919600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr8:58916400-58926600	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr8:58916400-58929000	Weak transcription	NHDF-Ad	bronchial
32	chr8:58916400-58929200	Weak transcription	Brain Hippocampus Middle	brain
33	chr8:58916400-58934600	Weak transcription	Brain Anterior Caudate	brain
34	chr8:58916600-58919800	Weak transcription	Fetal Heart	heart
35	chr8:58916600-58926400	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr8:58916600-58926400	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr8:58916600-58929000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr8:58916600-58929200	Weak transcription	Osteobl	bone
39	chr8:58916800-58918400	Strong transcription	Ovary	ovary
40	chr8:58916800-58918600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr8:58916800-58919600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr8:58916800-58919600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr8:58916800-58919600	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr8:58916800-58926000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr8:58916800-58928800	Weak transcription	Psoas Muscle	Psoas
46	chr8:58916800-58929200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr8:58917000-58918200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr8:58917000-58918800	Weak transcription	Liver	Liver
49	chr8:58917000-58919000	Weak transcription	Colon Smooth Muscle	Colon
50	chr8:58917000-58919600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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