Variant report

Variant	rs73681746
Chromosome Location	chr8:58937764-58937765
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:58931454..58933057-chr8:58936131..58938302,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16922983	1.00[EUR][1000 genomes]
rs28638177	1.00[EUR][1000 genomes]
rs55808340	1.00[EUR][1000 genomes]
rs56283627	1.00[EUR][1000 genomes]
rs59034196	0.83[AFR][1000 genomes]
rs59980825	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60729123	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6471674	1.00[EUR][1000 genomes]
rs6471677	1.00[EUR][1000 genomes]
rs6471678	1.00[EUR][1000 genomes]
rs7003864	1.00[EUR][1000 genomes]
rs73681724	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73681726	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73681728	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73681729	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73681748	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73681749	1.00[EUR][1000 genomes]
rs73681772	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7835069	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58908600-58942800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr8:58909400-58943000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr8:58924400-58946400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:58926600-58942000	Weak transcription	HSMM	muscle
5	chr8:58927000-58943000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr8:58927000-58948000	Weak transcription	Fetal Brain Male	brain
7	chr8:58929400-58937800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:58929400-58943200	Weak transcription	Fetal Stomach	stomach
9	chr8:58929400-58944000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr8:58929400-58944400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr8:58929800-58942600	Weak transcription	Fetal Brain Female	brain
12	chr8:58930200-58941400	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr8:58930400-58941400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:58935000-58948600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:58935000-58950200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr8:58935600-58937800	Weak transcription	Ovary	ovary
17	chr8:58935600-58941200	Weak transcription	Fetal Muscle Leg	muscle
18	chr8:58935600-58988800	Weak transcription	Aorta	Aorta
19	chr8:58936200-58938800	Enhancers	Fetal Heart	heart
20	chr8:58936200-58941400	Weak transcription	Liver	Liver
21	chr8:58936200-58944600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr8:58936400-58941400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr8:58936400-58941800	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr8:58936400-58942200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr8:58936400-58943000	Weak transcription	Fetal Lung	lung
26	chr8:58936400-58945200	Weak transcription	Fetal Kidney	kidney
27	chr8:58936600-58943400	Weak transcription	Adipose Nuclei	Adipose
28	chr8:58937000-58938200	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr8:58937200-58937800	Weak transcription	Pancreas	Pancrea
30	chr8:58937200-58938200	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr8:58937200-58938400	Enhancers	Right Ventricle	heart
32	chr8:58937200-58939600	Enhancers	Psoas Muscle	Psoas
33	chr8:58937400-58938600	Enhancers	Colon Smooth Muscle	Colon
34	chr8:58937400-58938600	Enhancers	Rectal Smooth Muscle	rectum
35	chr8:58937600-58938000	Enhancers	Left Ventricle	heart
36	chr8:58937600-58938000	Enhancers	Lung	lung
37	chr8:58937600-58938200	Enhancers	Right Atrium	heart
38	chr8:58937600-58938600	Enhancers	Spleen	Spleen
39	chr8:58937600-58942800	Weak transcription	HSMMtube	muscle
40	chr8:58937600-58943000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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