Variant report

Variant	rs59034196
Chromosome Location	chr8:58950270-58950271
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:58948042..58950902-chr8:58979793..58982678,2	MCF-7	breast:
2	chr8:58949470..58951996-chr8:58952987..58955730,2	MCF-7	breast:
3	chr8:58801373..58802969-chr8:58949244..58951710,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17239590	0.87[AFR][1000 genomes]
rs59980825	0.87[AFR][1000 genomes]
rs60729123	0.81[AFR][1000 genomes]
rs73681729	0.89[AFR][1000 genomes]
rs73681746	0.83[AFR][1000 genomes]
rs73681748	0.81[AFR][1000 genomes]
rs73681772	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58935600-58988800	Weak transcription	Aorta	Aorta
2	chr8:58943200-58950400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:58943800-58951200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:58944000-58950400	Weak transcription	Brain Anterior Caudate	brain
5	chr8:58944000-58950400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr8:58944000-58951400	Weak transcription	NHLF	lung
7	chr8:58944000-58951600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr8:58944600-58954400	Weak transcription	Fetal Intestine Small	intestine
9	chr8:58944600-58963000	Weak transcription	Stomach Mucosa	stomach
10	chr8:58944800-58962800	Weak transcription	Gastric	stomach
11	chr8:58945400-58952200	Weak transcription	HepG2	liver
12	chr8:58945400-58957800	Weak transcription	Pancreas	Pancrea
13	chr8:58945600-58951600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr8:58946000-58960000	Weak transcription	Fetal Kidney	kidney
15	chr8:58946600-58952800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr8:58946600-58953200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr8:58946800-58951600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr8:58947000-58954400	Weak transcription	Fetal Intestine Large	intestine
19	chr8:58947200-58951000	Weak transcription	Lung	lung
20	chr8:58947200-58951600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr8:58947400-58951000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr8:58947400-58953000	Enhancers	Fetal Heart	heart
23	chr8:58947600-58951200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr8:58948000-58951400	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr8:58948000-58951800	Enhancers	Psoas Muscle	Psoas
26	chr8:58948600-58951600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr8:58948600-58951600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr8:58948600-58951600	Weak transcription	Colon Smooth Muscle	Colon
29	chr8:58948800-58950400	Weak transcription	Fetal Stomach	stomach
30	chr8:58948800-58951000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr8:58948800-58951400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr8:58948800-58959800	Weak transcription	Ovary	ovary
33	chr8:58949000-58950400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr8:58949000-58950400	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr8:58949400-58950400	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr8:58949400-58950400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr8:58949400-58950400	Weak transcription	Fetal Lung	lung
38	chr8:58949400-58951000	Weak transcription	Fetal Muscle Trunk	muscle
39	chr8:58949400-58951800	Weak transcription	Right Ventricle	heart
40	chr8:58949400-58966800	Weak transcription	Liver	Liver
41	chr8:58949800-58952400	Enhancers	Left Ventricle	heart
42	chr8:58950000-58950400	Active TSS	NHDF-Ad	bronchial
43	chr8:58950000-58950600	Enhancers	Adipose Nuclei	Adipose
44	chr8:58950000-58950600	Enhancers	Spleen	Spleen
45	chr8:58950000-58951600	Enhancers	Brain Germinal Matrix	brain
46	chr8:58950000-58952000	Enhancers	Fetal Muscle Leg	muscle
47	chr8:58950000-58952400	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr8:58950000-58955200	Enhancers	Fetal Brain Male	brain
49	chr8:58950200-58950400	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr8:58950200-58950400	Active TSS	Brain Angular Gyrus	brain

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