Variant report

Variant	rs73681724
Chromosome Location	chr8:58913981-58913982
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16922983	1.00[EUR][1000 genomes]
rs28638177	1.00[EUR][1000 genomes]
rs55808340	1.00[EUR][1000 genomes]
rs56283627	1.00[EUR][1000 genomes]
rs59980825	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60729123	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60778851	0.86[AFR][1000 genomes]
rs6471674	1.00[EUR][1000 genomes]
rs6471677	1.00[EUR][1000 genomes]
rs6471678	1.00[EUR][1000 genomes]
rs7003864	1.00[EUR][1000 genomes]
rs73681726	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73681728	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73681729	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73681746	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73681748	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73681749	1.00[EUR][1000 genomes]
rs73681772	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7835069	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58908200-58919600	Weak transcription	Gastric	stomach
2	chr8:58908400-58914600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:58908400-58916800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:58908400-58919400	Weak transcription	Placenta	Placenta
5	chr8:58908400-58919400	Weak transcription	Pancreas	Pancrea
6	chr8:58908400-58919600	Weak transcription	Lung	lung
7	chr8:58908400-58920000	Weak transcription	Spleen	Spleen
8	chr8:58908400-58926400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr8:58908400-58928800	Weak transcription	Esophagus	oesophagus
10	chr8:58908400-58929000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr8:58908600-58915400	Weak transcription	Ovary	ovary
12	chr8:58908600-58915600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr8:58908600-58942800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr8:58908800-58929200	Weak transcription	Brain Substantia Nigra	brain
15	chr8:58909200-58915000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr8:58909200-58917200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr8:58909200-58919600	Weak transcription	Brain Angular Gyrus	brain
18	chr8:58909400-58914800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr8:58909400-58916000	Weak transcription	Left Ventricle	heart
20	chr8:58909400-58920000	Weak transcription	Stomach Mucosa	stomach
21	chr8:58909400-58928800	Weak transcription	Fetal Intestine Large	intestine
22	chr8:58909400-58943000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr8:58909600-58915000	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr8:58909600-58915800	Weak transcription	Brain Hippocampus Middle	brain
25	chr8:58909800-58914400	Weak transcription	Fetal Muscle Trunk	muscle
26	chr8:58909800-58914600	Weak transcription	Adipose Nuclei	Adipose
27	chr8:58909800-58915400	Weak transcription	Fetal Kidney	kidney
28	chr8:58909800-58919800	Weak transcription	Right Ventricle	heart
29	chr8:58909800-58921600	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr8:58910000-58915800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr8:58910000-58919200	Weak transcription	Aorta	Aorta
32	chr8:58910200-58914600	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr8:58910200-58915600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr8:58910200-58915800	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr8:58910400-58916000	Weak transcription	Stomach Smooth Muscle	stomach
36	chr8:58910600-58914400	Weak transcription	Liver	Liver
37	chr8:58910600-58915000	Weak transcription	Fetal Stomach	stomach
38	chr8:58910600-58915000	Weak transcription	NHDF-Ad	bronchial
39	chr8:58910600-58915400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr8:58910600-58915600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr8:58910600-58916000	Weak transcription	NHLF	lung
42	chr8:58910800-58914200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr8:58910800-58914400	Weak transcription	Fetal Brain Male	brain
44	chr8:58910800-58914400	Weak transcription	Fetal Lung	lung
45	chr8:58910800-58915800	Weak transcription	Osteobl	bone
46	chr8:58910800-58916000	Weak transcription	Brain Anterior Caudate	brain
47	chr8:58911000-58914000	Weak transcription	Brain Germinal Matrix	brain
48	chr8:58911000-58914000	Weak transcription	Fetal Muscle Leg	muscle
49	chr8:58911000-58914400	Weak transcription	Fetal Brain Female	brain
50	chr8:58911000-58914600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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