Variant report

Variant	rs17835765
Chromosome Location	chr8:58942121-58942122
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr8:58941923-58942148	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
FAM110B	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11998684	0.85[JPT][hapmap]
rs13263290	1.00[CEU][hapmap];0.85[JPT][hapmap];0.98[EUR][1000 genomes]
rs13271679	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16922941	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs17176389	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17239283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17239590	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34040020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35055955	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35160448	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35338825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35623322	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35719782	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6991555	1.00[CEU][hapmap];0.85[JPT][hapmap];0.98[EUR][1000 genomes]
rs71519494	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7835676	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58908600-58942800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr8:58909400-58943000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr8:58924400-58946400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:58927000-58943000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr8:58927000-58948000	Weak transcription	Fetal Brain Male	brain
6	chr8:58929400-58943200	Weak transcription	Fetal Stomach	stomach
7	chr8:58929400-58944000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr8:58929400-58944400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:58929800-58942600	Weak transcription	Fetal Brain Female	brain
10	chr8:58935000-58948600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:58935000-58950200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr8:58935600-58988800	Weak transcription	Aorta	Aorta
13	chr8:58936200-58944600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr8:58936400-58942200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr8:58936400-58943000	Weak transcription	Fetal Lung	lung
16	chr8:58936400-58945200	Weak transcription	Fetal Kidney	kidney
17	chr8:58936600-58943400	Weak transcription	Adipose Nuclei	Adipose
18	chr8:58937600-58942800	Weak transcription	HSMMtube	muscle
19	chr8:58937600-58943000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr8:58938000-58943200	Weak transcription	Left Ventricle	heart
21	chr8:58938000-58943400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr8:58938000-58943400	Weak transcription	Pancreas	Pancrea
23	chr8:58938200-58943000	Weak transcription	Right Atrium	heart
24	chr8:58938400-58943200	Weak transcription	Right Ventricle	heart
25	chr8:58940200-58943200	Weak transcription	NHLF	lung
26	chr8:58941200-58943000	Enhancers	NHDF-Ad	bronchial
27	chr8:58941400-58942800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr8:58941400-58943200	Enhancers	Liver	Liver
29	chr8:58941400-58944600	Enhancers	Colon Smooth Muscle	Colon
30	chr8:58941600-58942200	Weak transcription	Fetal Heart	heart
31	chr8:58941600-58942200	Weak transcription	Stomach Mucosa	stomach
32	chr8:58941600-58943000	Weak transcription	Ovary	ovary
33	chr8:58941600-58943600	Weak transcription	Gastric	stomach
34	chr8:58941600-58943800	Enhancers	Fetal Muscle Leg	muscle
35	chr8:58941600-58944400	Weak transcription	Lung	lung
36	chr8:58941600-58944400	Weak transcription	Spleen	Spleen
37	chr8:58941800-58942400	Enhancers	Pancreatic Islets	Pancreatic Islet
38	chr8:58941800-58943200	Weak transcription	Psoas Muscle	Psoas
39	chr8:58941800-58943200	Weak transcription	Stomach Smooth Muscle	stomach
40	chr8:58941800-58946200	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr8:58941800-58946400	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr8:58942000-58943000	Enhancers	HSMM	muscle
43	chr8:58942000-58943200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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