Variant report

Variant	rs13271679
Chromosome Location	chr8:58925025-58925026
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:58905823..58908650-chr8:58924248..58926314,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169122	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13263290	0.98[EUR][1000 genomes]
rs16922941	0.98[EUR][1000 genomes]
rs17239283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17239590	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17835765	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34040020	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35055955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35160448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35338825	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35623322	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35719782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6991555	0.98[EUR][1000 genomes]
rs71519494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58908400-58926400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:58908400-58928800	Weak transcription	Esophagus	oesophagus
3	chr8:58908400-58929000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr8:58908600-58942800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr8:58908800-58929200	Weak transcription	Brain Substantia Nigra	brain
6	chr8:58909400-58928800	Weak transcription	Fetal Intestine Large	intestine
7	chr8:58909400-58943000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr8:58913400-58929000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr8:58914200-58929000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr8:58916200-58926400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr8:58916400-58926600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr8:58916400-58929000	Weak transcription	NHDF-Ad	bronchial
13	chr8:58916400-58929200	Weak transcription	Brain Hippocampus Middle	brain
14	chr8:58916400-58934600	Weak transcription	Brain Anterior Caudate	brain
15	chr8:58916600-58926400	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr8:58916600-58926400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr8:58916600-58929000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr8:58916600-58929200	Weak transcription	Osteobl	bone
19	chr8:58916800-58926000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr8:58916800-58928800	Weak transcription	Psoas Muscle	Psoas
21	chr8:58916800-58929200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr8:58917000-58926000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr8:58917000-58926400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr8:58917000-58927200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr8:58917400-58925400	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr8:58917600-58925400	Strong transcription	Fetal Muscle Leg	muscle
27	chr8:58917600-58928000	Weak transcription	Fetal Intestine Small	intestine
28	chr8:58918400-58926400	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr8:58918400-58927000	Strong transcription	Fetal Stomach	stomach
30	chr8:58918800-58926400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr8:58919400-58926200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr8:58920000-58929000	Weak transcription	Pancreas	Pancrea
33	chr8:58920200-58926600	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr8:58920400-58925400	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr8:58920400-58926400	Weak transcription	Gastric	stomach
36	chr8:58920400-58926400	Weak transcription	Lung	lung
37	chr8:58920400-58928800	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr8:58920600-58926800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr8:58920600-58929000	Weak transcription	Stomach Mucosa	stomach
40	chr8:58921600-58927400	Weak transcription	Fetal Kidney	kidney
41	chr8:58921600-58934200	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr8:58921800-58928800	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr8:58921800-58937400	Weak transcription	HSMMtube	muscle
44	chr8:58922000-58925400	Weak transcription	Right Ventricle	heart
45	chr8:58922000-58926400	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr8:58922000-58926600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr8:58922000-58928800	Weak transcription	Colon Smooth Muscle	Colon
48	chr8:58922400-58926200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr8:58923000-58925200	Weak transcription	Left Ventricle	heart
50	chr8:58923000-58925800	Weak transcription	Aorta	Aorta

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