Variant report

Variant	rs13277736
Chromosome Location	chr8:68277883-68277884
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10113752	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10504401	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11779992	0.83[ASN][1000 genomes]
rs11780094	0.85[ASN][1000 genomes]
rs12678865	0.81[ASN][1000 genomes]
rs13253205	0.83[ASN][1000 genomes]
rs13275593	0.81[CEU][hapmap]
rs1864610	0.82[ASN][1000 genomes]
rs2008936	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2116130	0.85[ASN][1000 genomes]
rs6992604	0.92[ASN][1000 genomes]
rs718348	0.82[CEU][hapmap];0.87[CHB][hapmap];0.85[ASN][1000 genomes]
rs7820370	0.85[ASN][1000 genomes]
rs7841756	0.81[CEU][hapmap];0.87[CHB][hapmap]
rs7844861	0.82[ASN][1000 genomes]
rs891589	1.00[CEU][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv1839724	chr8:68195817-68346693	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1024135	chr8:68235792-68629789	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv539642	chr8:68235792-68629789	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv2752264	chr8:68244546-68647201	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68274000-68278000	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr8:68276600-68278400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr8:68276800-68278200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr8:68276800-68278400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr8:68276800-68278400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr8:68276800-68278400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr8:68277000-68278000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr8:68277200-68278600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr8:68277800-68278600	Enhancers	Psoas Muscle	Psoas
10	chr8:68277800-68278600	Flanking Active TSS	K562	blood
11	chr8:68277800-68279000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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