Variant report

Variant	rs1864610
Chromosome Location	chr8:68292931-68292932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:68292865..68293515-chr8:69766457..69767353,3	MCF-7	breast:
2	chr8:68292912..68293530-chr8:68649284..68650252,2	MCF-7	breast:
3	chr8:68254316..68258926-chr8:68291243..68296243,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000066777	Chromatin interaction
ENSG00000271966	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10113752	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10504401	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11779992	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11780094	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11995348	0.82[ASN][1000 genomes]
rs12678865	0.81[ASN][1000 genomes]
rs12681292	0.83[ASN][1000 genomes]
rs13275593	0.84[ASN][1000 genomes]
rs13277736	0.82[ASN][1000 genomes]
rs2008936	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2358131	0.90[ASN][1000 genomes]
rs7822637	0.82[ASN][1000 genomes]
rs7841756	0.83[ASN][1000 genomes]
rs7844861	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs891589	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv1839724	chr8:68195817-68346693	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1024135	chr8:68235792-68629789	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv539642	chr8:68235792-68629789	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv2752264	chr8:68244546-68647201	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68282000-68293000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr8:68283400-68314000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:68291600-68294600	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr8:68292400-68293600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:68292400-68294200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr8:68292400-68294600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:68292400-68294600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:68292600-68293000	Weak transcription	Primary B cells from cord blood	blood
9	chr8:68292600-68293800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr8:68292600-68293800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr8:68292600-68293800	Enhancers	Fetal Kidney	kidney
12	chr8:68292600-68294400	Enhancers	NHEK	skin
13	chr8:68292600-68296000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr8:68292800-68293200	Enhancers	Duodenum Mucosa	Duodenum
15	chr8:68292800-68293400	Enhancers	H9 Cell Line	embryonic stem cell
16	chr8:68292800-68293400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr8:68292800-68293400	Enhancers	Liver	Liver
18	chr8:68292800-68293400	Enhancers	Gastric	stomach
19	chr8:68292800-68294000	Enhancers	H1 Cell Line	embryonic stem cell
20	chr8:68292800-68294000	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr8:68292800-68294200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr8:68292800-68294200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr8:68292800-68294200	Enhancers	Placenta	Placenta
24	chr8:68292800-68294600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr8:68292800-68294600	Enhancers	HMEC	breast
26	chr8:68292800-68295200	Weak transcription	Primary monocytes fromperipheralblood	blood

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