Variant report

Variant	rs11995348
Chromosome Location	chr8:68261074-68261075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:68256543..68259078-chr8:68260057..68264184,4	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10105795	0.81[ASN][1000 genomes]
rs10957384	0.86[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11774715	0.89[ASN][1000 genomes]
rs11779287	0.89[ASN][1000 genomes]
rs11779992	0.81[ASN][1000 genomes]
rs11780094	0.84[ASN][1000 genomes]
rs11986169	0.82[ASN][1000 genomes]
rs12674570	0.84[ASN][1000 genomes]
rs12674848	0.88[ASN][1000 genomes]
rs12675528	0.82[ASN][1000 genomes]
rs12678025	0.81[ASN][1000 genomes]
rs12678865	0.94[ASN][1000 genomes]
rs12679614	0.81[ASN][1000 genomes]
rs12681292	0.97[ASN][1000 genomes]
rs12682412	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13253205	0.89[ASN][1000 genomes]
rs13255070	0.87[ASN][1000 genomes]
rs13264289	0.84[ASN][1000 genomes]
rs13267015	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13275593	0.88[ASW][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1544986	0.86[CHB][hapmap];0.93[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.89[TSI][hapmap];0.89[ASN][1000 genomes]
rs17425781	0.82[ASN][1000 genomes]
rs1821026	0.81[ASN][1000 genomes]
rs1864610	0.82[ASN][1000 genomes]
rs2116130	0.89[ASN][1000 genomes]
rs28640047	0.81[ASN][1000 genomes]
rs34132973	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs34345865	0.84[ASN][1000 genomes]
rs34711984	0.84[ASN][1000 genomes]
rs35480743	0.86[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.89[TSI][hapmap];0.89[ASN][1000 genomes]
rs35754047	0.89[ASN][1000 genomes]
rs35904049	0.82[ASN][1000 genomes]
rs56186469	0.81[ASN][1000 genomes]
rs57179217	0.84[ASN][1000 genomes]
rs60196076	0.82[ASN][1000 genomes]
rs6472297	0.86[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs68086555	0.88[ASN][1000 genomes]
rs6987724	0.82[ASN][1000 genomes]
rs6992604	0.84[ASN][1000 genomes]
rs6993324	0.81[ASN][1000 genomes]
rs7002191	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7002622	0.81[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap]
rs7013561	0.81[ASN][1000 genomes]
rs718348	0.95[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs72654960	0.81[ASN][1000 genomes]
rs7464980	0.89[ASN][1000 genomes]
rs7812777	0.82[ASN][1000 genomes]
rs7812887	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7813810	0.81[CHB][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs7818520	0.81[ASN][1000 genomes]
rs7820370	0.89[ASN][1000 genomes]
rs7822637	0.96[ASN][1000 genomes]
rs7823436	0.81[ASN][1000 genomes]
rs7830183	0.81[ASN][1000 genomes]
rs7841468	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7841756	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7844125	0.81[ASN][1000 genomes]
rs7844861	0.81[ASN][1000 genomes]
rs891589	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv1839724	chr8:68195817-68346693	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1024135	chr8:68235792-68629789	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv539642	chr8:68235792-68629789	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv2752264	chr8:68244546-68647201	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11995348	LGALS4	trans	parietal	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68256600-68262400	Weak transcription	Spleen	Spleen
2	chr8:68257200-68261200	Weak transcription	K562	blood
3	chr8:68257200-68261600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr8:68257200-68268600	Weak transcription	Primary T cells from cord blood	blood
5	chr8:68257600-68261200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr8:68259000-68261200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr8:68259400-68261200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr8:68260200-68261800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr8:68260400-68262000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr8:68260600-68261800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr8:68260600-68261800	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr8:68260600-68261800	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr8:68260600-68261800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr8:68261000-68265200	Enhancers	Primary neutrophils fromperipheralblood	blood

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