Variant report

Variant	rs1821026
Chromosome Location	chr8:68218476-68218477
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:68211004..68214267-chr8:68215813..68220684,4	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10105795	1.00[ASN][1000 genomes]
rs10957381	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs10957384	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11774715	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11779287	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11986169	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11995348	0.81[ASN][1000 genomes]
rs12674570	0.88[ASN][1000 genomes]
rs12674848	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12675528	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12678025	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12678865	0.84[EUR][1000 genomes]
rs12679614	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12681292	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12681862	0.91[CHB][hapmap]
rs12682412	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13253205	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13255070	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13264289	0.95[ASN][1000 genomes]
rs13267015	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13270606	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13275593	0.95[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13280556	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1544986	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17425781	0.85[ASN][1000 genomes]
rs2116130	0.87[ASN][1000 genomes]
rs28640047	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34132973	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34345865	0.88[ASN][1000 genomes]
rs34711984	0.88[ASN][1000 genomes]
rs35480743	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35754047	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35904049	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55737416	0.80[AFR][1000 genomes]
rs56101466	0.80[AFR][1000 genomes]
rs56186469	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56858183	0.82[AFR][1000 genomes]
rs57179217	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs58715460	0.82[AFR][1000 genomes]
rs60196076	0.99[ASN][1000 genomes]
rs6472297	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs68086555	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6987724	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6992604	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6993324	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7002191	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7002622	0.86[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs7013561	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs718348	0.95[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72654960	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73693153	0.80[AFR][1000 genomes]
rs7464980	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7812777	1.00[CEU][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7812887	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7813810	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7817641	0.84[EUR][1000 genomes]
rs7818520	1.00[ASN][1000 genomes]
rs7820370	0.87[ASN][1000 genomes]
rs7822637	0.82[EUR][1000 genomes]
rs7823436	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7830183	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7841468	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7841756	0.95[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7844125	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7846677	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv1839724	chr8:68195817-68346693	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68155800-68226000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr8:68159000-68221400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr8:68162400-68231000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:68173600-68236400	Weak transcription	Stomach Mucosa	stomach
5	chr8:68174000-68225600	Weak transcription	Esophagus	oesophagus
6	chr8:68175000-68219400	Weak transcription	Right Ventricle	heart
7	chr8:68176000-68219800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:68179200-68221600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr8:68197800-68234200	Weak transcription	Aorta	Aorta
10	chr8:68199600-68219600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr8:68199800-68219600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr8:68199800-68219800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr8:68200200-68219600	Weak transcription	Brain Angular Gyrus	brain
14	chr8:68204400-68219600	Weak transcription	NHLF	lung
15	chr8:68208800-68226000	Weak transcription	A549	lung
16	chr8:68209200-68219000	Weak transcription	Left Ventricle	heart
17	chr8:68209600-68252400	Weak transcription	Fetal Kidney	kidney
18	chr8:68209800-68221400	Weak transcription	Fetal Brain Female	brain
19	chr8:68210800-68218800	Weak transcription	Colon Smooth Muscle	Colon
20	chr8:68210800-68219600	Weak transcription	Fetal Heart	heart
21	chr8:68210800-68225600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr8:68210800-68225800	Weak transcription	K562	blood
23	chr8:68211000-68219400	Weak transcription	Brain Substantia Nigra	brain
24	chr8:68211000-68219600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr8:68211600-68240800	Weak transcription	Fetal Brain Male	brain
26	chr8:68212000-68225200	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr8:68212200-68219000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr8:68212200-68219000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr8:68212200-68219600	Weak transcription	Primary hematopoietic stem cells	blood
30	chr8:68212200-68220000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr8:68212200-68220200	Weak transcription	Thymus	Thymus
32	chr8:68212200-68221200	Weak transcription	Fetal Muscle Leg	muscle
33	chr8:68212200-68221800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr8:68212200-68225800	Weak transcription	Spleen	Spleen
35	chr8:68212200-68229000	Weak transcription	HepG2	liver
36	chr8:68212400-68219400	Weak transcription	Brain Hippocampus Middle	brain
37	chr8:68212400-68219600	Weak transcription	Fetal Lung	lung
38	chr8:68212400-68219800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr8:68212400-68228200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr8:68212600-68219600	Weak transcription	NHDF-Ad	bronchial
41	chr8:68212600-68219800	Weak transcription	Brain Anterior Caudate	brain
42	chr8:68212800-68221200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr8:68212800-68225800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr8:68212800-68252400	Weak transcription	Hela-S3	cervix
45	chr8:68213000-68220000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr8:68213000-68225400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr8:68213000-68225800	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr8:68213200-68219000	Weak transcription	Fetal Intestine Small	intestine
49	chr8:68213200-68222200	Weak transcription	Fetal Stomach	stomach
50	chr8:68213200-68229000	Weak transcription	Small Intestine	intestine

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