Variant report

Variant	rs56858183
Chromosome Location	chr8:68164480-68164481
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:68163225..68165187-chr8:68178296..68180300,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000066777	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10504399	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11557200	0.85[EUR][1000 genomes]
rs11986053	0.85[EUR][1000 genomes]
rs11986982	0.85[EUR][1000 genomes]
rs11988465	0.85[EUR][1000 genomes]
rs11997404	0.85[EUR][1000 genomes]
rs16919053	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933139	0.85[EUR][1000 genomes]
rs16933147	0.85[EUR][1000 genomes]
rs16933160	0.80[EUR][1000 genomes]
rs16933162	0.85[EUR][1000 genomes]
rs16933170	0.85[EUR][1000 genomes]
rs16933173	0.85[EUR][1000 genomes]
rs16933182	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933190	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933204	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16933214	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1821026	0.82[AFR][1000 genomes]
rs2168542	0.85[EUR][1000 genomes]
rs2290585	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2305672	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2305673	0.85[EUR][1000 genomes]
rs3780131	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55662680	0.85[EUR][1000 genomes]
rs55737416	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55745066	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55865037	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs55983978	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55986624	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56101466	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57101332	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57867847	0.85[EUR][1000 genomes]
rs58448590	0.85[EUR][1000 genomes]
rs58715460	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59335949	0.85[EUR][1000 genomes]
rs59634730	0.85[EUR][1000 genomes]
rs59870074	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60324950	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60894518	0.85[EUR][1000 genomes]
rs61193782	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6984568	0.85[EUR][1000 genomes]
rs6987597	0.85[EUR][1000 genomes]
rs6987624	0.85[EUR][1000 genomes]
rs6990298	0.85[EUR][1000 genomes]
rs6991974	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691182	0.85[EUR][1000 genomes]
rs73691185	0.85[EUR][1000 genomes]
rs73691186	0.85[EUR][1000 genomes]
rs73691192	0.85[EUR][1000 genomes]
rs73691193	0.85[EUR][1000 genomes]
rs73693124	0.85[EUR][1000 genomes]
rs73693135	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73693152	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73693153	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7461383	0.85[EUR][1000 genomes]
rs7812425	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7812510	0.82[EUR][1000 genomes]
rs7816827	0.85[EUR][1000 genomes]
rs7819894	0.82[EUR][1000 genomes]
rs7819895	0.82[EUR][1000 genomes]
rs7822754	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7833373	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7834516	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7841884	0.85[EUR][1000 genomes]
rs7846677	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68104600-68193000	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr8:68104600-68215600	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr8:68104800-68182400	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr8:68105000-68184400	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr8:68113000-68172600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:68135200-68184400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr8:68139000-68178000	Weak transcription	Small Intestine	intestine
8	chr8:68146000-68168200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr8:68149600-68167200	Weak transcription	Fetal Heart	heart
10	chr8:68149800-68173000	Weak transcription	Psoas Muscle	Psoas
11	chr8:68153600-68181000	Strong transcription	Rectal Mucosa Donor 31	rectum
12	chr8:68153800-68168400	Strong transcription	Fetal Thymus	thymus
13	chr8:68154000-68170800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr8:68154800-68175600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:68155000-68179200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr8:68155200-68172400	Weak transcription	Stomach Mucosa	stomach
17	chr8:68155200-68173600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr8:68155400-68167400	Weak transcription	Brain Angular Gyrus	brain
19	chr8:68155600-68173200	Weak transcription	Esophagus	oesophagus
20	chr8:68155600-68175400	Weak transcription	Aorta	Aorta
21	chr8:68155600-68175400	Weak transcription	Hela-S3	cervix
22	chr8:68155600-68193800	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr8:68155800-68226000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr8:68156000-68166200	Weak transcription	NHEK	skin
25	chr8:68157600-68181400	Strong transcription	Primary B cells from cord blood	blood
26	chr8:68157800-68181000	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr8:68158000-68166000	Strong transcription	Fetal Intestine Large	intestine
28	chr8:68158000-68166200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr8:68158000-68181400	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr8:68158200-68165800	Strong transcription	Fetal Kidney	kidney
31	chr8:68158200-68166000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr8:68159000-68180600	Strong transcription	Liver	Liver
33	chr8:68159000-68221400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr8:68159200-68165000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr8:68159200-68168200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr8:68159400-68165000	Strong transcription	Fetal Lung	lung
37	chr8:68159400-68166000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr8:68159400-68181000	Strong transcription	Primary T cells from cord blood	blood
39	chr8:68159600-68180800	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr8:68159600-68180800	Strong transcription	Dnd41	blood
41	chr8:68159600-68181000	Strong transcription	Primary B cells from peripheral blood	blood
42	chr8:68159800-68165400	Strong transcription	Muscle Satellite Cultured Cells	--
43	chr8:68159800-68165600	Strong transcription	HSMMtube	muscle
44	chr8:68159800-68165800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr8:68159800-68166000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr8:68159800-68166200	Strong transcription	Placenta	Placenta
47	chr8:68159800-68166200	Strong transcription	Stomach Smooth Muscle	stomach
48	chr8:68159800-68166600	Strong transcription	Fetal Brain Female	brain
49	chr8:68159800-68166600	Strong transcription	NHDF-Ad	bronchial
50	chr8:68159800-68170400	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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