Variant report

Variant	rs7812510
Chromosome Location	chr8:67938924-67938925
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67836242..67840653-chr8:67938830..67942453,3	K562	blood:
2	chr8:67932028..67934923-chr8:67938623..67940861,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000245910	Chromatin interaction
ENSG00000178125	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10504399	0.82[EUR][1000 genomes]
rs11557200	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11986053	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11986982	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11988465	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11990461	0.82[AMR][1000 genomes]
rs11992605	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11997404	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12114202	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16919053	0.87[EUR][1000 genomes]
rs16933138	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16933139	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16933147	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16933160	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16933162	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16933170	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16933173	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16933182	0.95[EUR][1000 genomes]
rs16933190	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16933204	0.82[EUR][1000 genomes]
rs16933214	0.82[EUR][1000 genomes]
rs2168542	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2290585	0.92[EUR][1000 genomes]
rs2305672	0.87[EUR][1000 genomes]
rs2305673	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28547325	0.84[AMR][1000 genomes]
rs3779995	0.82[AMR][1000 genomes]
rs3780131	0.87[EUR][1000 genomes]
rs55662680	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55737416	0.87[EUR][1000 genomes]
rs55745066	0.92[EUR][1000 genomes]
rs55865037	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55983978	0.87[EUR][1000 genomes]
rs55986624	0.82[EUR][1000 genomes]
rs56101466	0.87[EUR][1000 genomes]
rs56858183	0.82[EUR][1000 genomes]
rs57101332	0.87[EUR][1000 genomes]
rs57867847	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58448590	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58715460	0.82[EUR][1000 genomes]
rs59335949	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59634730	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60324950	0.87[EUR][1000 genomes]
rs60666237	0.82[AMR][1000 genomes]
rs60894518	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61085456	0.82[AMR][1000 genomes]
rs61193782	0.87[EUR][1000 genomes]
rs6472289	0.82[AMR][1000 genomes]
rs6982699	0.82[AMR][1000 genomes]
rs6984447	0.82[AMR][1000 genomes]
rs6984568	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6984650	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6987597	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6987624	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6990298	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6991974	0.87[EUR][1000 genomes]
rs73691182	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73691185	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73691186	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73691192	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73691193	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73693124	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73693135	0.82[EUR][1000 genomes]
rs73693152	0.87[EUR][1000 genomes]
rs73693153	0.87[EUR][1000 genomes]
rs73693631	0.82[AMR][1000 genomes]
rs73693632	0.82[AMR][1000 genomes]
rs7461383	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7812425	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7815142	0.82[AMR][1000 genomes]
rs7815863	0.84[AMR][1000 genomes]
rs7816827	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7819894	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7819895	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7820403	0.82[AMR][1000 genomes]
rs7824775	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7833373	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7834516	0.92[EUR][1000 genomes]
rs7841884	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7842770	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802652	chr8:67894007-67964309	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1016742	chr8:67917418-68125319	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv539639	chr8:67917418-68125319	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67935600-67940000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr8:67936000-67939800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:67938200-67940200	Weak transcription	H1 Cell Line	embryonic stem cell

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