Variant report

Variant	rs6982699
Chromosome Location	chr8:67830127-67830128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:67827867..67830458-chr8:67832001..67833699,2	MCF-7	breast:
2	chr8:67827975..67841001-chr8:67966279..67982243,48	K562	blood:
3	chr8:67828966..67835690-chr8:67939145..67944421,12	MCF-7	breast:
4	chr8:67828671..67841001-chr8:67968948..67981786,43	K562	blood:

Variant related genes	Relation type
ENSG00000121022	Chromatin interaction
ENSG00000104218	Chromatin interaction
ENSG00000266491	Chromatin interaction
ENSG00000178125	Chromatin interaction

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs11557200	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11985572	0.87[EUR][1000 genomes]
rs11986053	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11986982	0.82[EUR][1000 genomes]
rs11987310	0.87[EUR][1000 genomes]
rs11988465	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11990461	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11990636	0.87[EUR][1000 genomes]
rs11992069	0.87[EUR][1000 genomes]
rs11992605	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11995256	0.87[EUR][1000 genomes]
rs11995814	0.81[EUR][1000 genomes]
rs11996861	0.85[EUR][1000 genomes]
rs11997404	0.82[EUR][1000 genomes]
rs11997967	0.87[EUR][1000 genomes]
rs11998301	0.87[EUR][1000 genomes]
rs12114202	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12114734	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933034	0.90[EUR][1000 genomes]
rs16933039	0.87[EUR][1000 genomes]
rs16933057	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs16933060	0.90[EUR][1000 genomes]
rs16933079	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933080	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933097	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs16933138	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16933139	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16933147	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16933162	0.82[EUR][1000 genomes]
rs16933170	0.82[EUR][1000 genomes]
rs16933173	0.82[EUR][1000 genomes]
rs2168542	0.82[EUR][1000 genomes]
rs2305673	0.82[EUR][1000 genomes]
rs28547325	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35517376	0.87[EUR][1000 genomes]
rs35809374	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3779995	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3857962	0.87[EUR][1000 genomes]
rs3913346	0.85[EUR][1000 genomes]
rs3929419	0.87[EUR][1000 genomes]
rs4073730	0.87[EUR][1000 genomes]
rs55662680	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55865037	0.82[EUR][1000 genomes]
rs55893527	0.87[EUR][1000 genomes]
rs56056216	0.87[EUR][1000 genomes]
rs56215867	0.87[EUR][1000 genomes]
rs56345609	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56717011	0.85[AMR][1000 genomes]
rs57867847	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57894537	0.87[EUR][1000 genomes]
rs58434561	0.87[EUR][1000 genomes]
rs58448590	0.82[EUR][1000 genomes]
rs58653469	0.87[EUR][1000 genomes]
rs58991268	0.83[EUR][1000 genomes]
rs59226286	0.85[EUR][1000 genomes]
rs59335949	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59469156	0.87[EUR][1000 genomes]
rs59634730	0.82[EUR][1000 genomes]
rs60666237	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60741740	0.87[EUR][1000 genomes]
rs60773515	0.87[EUR][1000 genomes]
rs60894518	0.82[EUR][1000 genomes]
rs61080934	0.87[EUR][1000 genomes]
rs61085456	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472285	0.87[EUR][1000 genomes]
rs6472289	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6651278	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6981761	0.87[EUR][1000 genomes]
rs6982137	0.87[EUR][1000 genomes]
rs6983632	0.87[EUR][1000 genomes]
rs6984447	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6984568	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6984650	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6985273	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6987597	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6987624	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6990298	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6998252	0.85[EUR][1000 genomes]
rs6998777	0.90[EUR][1000 genomes]
rs7002479	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7015619	0.87[EUR][1000 genomes]
rs7017471	0.87[EUR][1000 genomes]
rs73691182	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs73691185	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73691186	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73691192	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73691193	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73691562	0.87[EUR][1000 genomes]
rs73691565	0.85[EUR][1000 genomes]
rs73691571	0.87[EUR][1000 genomes]
rs73691572	0.87[EUR][1000 genomes]
rs73691578	0.87[EUR][1000 genomes]
rs73691579	0.87[EUR][1000 genomes]
rs73691582	0.82[EUR][1000 genomes]
rs73691586	0.90[EUR][1000 genomes]
rs73691595	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs73693124	0.82[EUR][1000 genomes]
rs73693615	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73693631	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73693632	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7461383	0.82[EUR][1000 genomes]
rs7812425	0.82[EUR][1000 genomes]
rs7812510	0.82[AMR][1000 genomes]
rs7815142	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7815863	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7816827	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7819894	0.85[AMR][1000 genomes]
rs7819895	0.85[AMR][1000 genomes]
rs7820403	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7824775	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7833373	0.82[EUR][1000 genomes]
rs7841884	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7842770	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs979679	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9918869	0.87[EUR][1000 genomes]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67804800-67832400	Weak transcription	Left Ventricle	heart
2	chr8:67822600-67836600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:67822800-67834600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:67823000-67833000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr8:67828400-67831000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:67828800-67833400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:67828800-67834000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr8:67829000-67830200	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr8:67829000-67833400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr8:67829000-67833400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr8:67829000-67834000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr8:67829000-67835000	Weak transcription	Thymus	Thymus
13	chr8:67829000-67835400	Weak transcription	Spleen	Spleen
14	chr8:67829000-67836800	Weak transcription	Aorta	Aorta
15	chr8:67829200-67830800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr8:67829200-67833400	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr8:67829400-67830600	Enhancers	Primary hematopoietic stem cells	blood
18	chr8:67829400-67832000	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr8:67829400-67832800	Weak transcription	Fetal Thymus	thymus
20	chr8:67829400-67833400	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr8:67829600-67830400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
22	chr8:67829600-67830400	Active TSS	Adipose Nuclei	Adipose
23	chr8:67829600-67830600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
24	chr8:67829600-67834800	Weak transcription	Brain Anterior Caudate	brain
25	chr8:67829600-67835200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr8:67829600-67836000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr8:67829800-67830200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
28	chr8:67829800-67830200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
29	chr8:67829800-67830200	Enhancers	Liver	Liver
30	chr8:67829800-67830200	Active TSS	Duodenum Smooth Muscle	Duodenum
31	chr8:67829800-67830200	Flanking Active TSS	GM12878-XiMat	blood
32	chr8:67829800-67830400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
33	chr8:67829800-67830400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
34	chr8:67829800-67830400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
35	chr8:67829800-67830400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
36	chr8:67829800-67830400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr8:67829800-67830400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
38	chr8:67829800-67830400	Active TSS	Duodenum Mucosa	Duodenum
39	chr8:67829800-67830600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
40	chr8:67829800-67830600	Active TSS	Rectal Mucosa Donor 29	rectum
41	chr8:67829800-67830800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
42	chr8:67830000-67830200	Flanking Active TSS	Primary B cells from peripheral blood	blood
43	chr8:67830000-67830200	Enhancers	Primary T cells from cord blood	blood
44	chr8:67830000-67830200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr8:67830000-67830200	Enhancers	Fetal Kidney	kidney
46	chr8:67830000-67830200	Enhancers	Rectal Smooth Muscle	rectum
47	chr8:67830000-67830200	Active TSS	Right Atrium	heart
48	chr8:67830000-67830400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
49	chr8:67830000-67830400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr8:67830000-67830400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood

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