Variant report

Variant	rs60666237
Chromosome Location	chr8:67832708-67832709
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:22)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:67825616..67828276-chr8:67831795..67834715,3	MCF-7	breast:
2	chr8:67578645..67581633-chr8:67830698..67833385,3	K562	blood:
3	chr8:67827975..67841001-chr8:67966279..67982243,48	K562	blood:
4	chr8:67831270..67834163-chr8:68004872..68007019,2	K562	blood:
5	chr8:67816751..67818984-chr8:67830990..67833425,2	K562	blood:
6	chr8:67432728..67435417-chr8:67831392..67833767,2	MCF-7	breast:
7	chr8:67830837..67833452-chr8:67940153..67941893,2	K562	blood:
8	chr8:67830248..67833464-chr8:68001607..68004691,3	K562	blood:
9	chr8:67371439..67373634-chr8:67831898..67834406,2	MCF-7	breast:
10	chr8:67831838..67833414-chr8:67840427..67842498,2	K562	blood:
11	chr8:67831739..67833630-chr8:67947662..67949714,2	K562	blood:
12	chr8:67828966..67835690-chr8:67939145..67944421,12	MCF-7	breast:
13	chr8:67831601..67833863-chr8:68059505..68062271,2	MCF-7	breast:
14	chr8:67831268..67834338-chr8:67951329..67953528,3	K562	blood:
15	chr8:67831901..67834274-chr8:68007659..68009308,2	K562	blood:
16	chr8:67802193..67804699-chr8:67831114..67833206,2	K562	blood:
17	chr8:67831819..67834409-chr8:68034635..68036146,2	K562	blood:
18	chr8:67830433..67839604-chr8:67970368..67979371,24	MCF-7	breast:
19	chr8:67827867..67830458-chr8:67832001..67833699,2	MCF-7	breast:
20	chr8:67830645..67839054-chr8:67969883..67975997,15	MCF-7	breast:
21	chr8:67828671..67841001-chr8:67968948..67981786,43	K562	blood:
22	chr8:67831457..67834184-chr8:68011010..68013748,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000147576	Chromatin interaction
ENSG00000121022	Chromatin interaction
ENSG00000213865	Chromatin interaction
ENSG00000169085	Chromatin interaction
ENSG00000175073	Chromatin interaction
ENSG00000266491	Chromatin interaction
ENSG00000104218	Chromatin interaction
ENSG00000178125	Chromatin interaction
ENSG00000252637	Chromatin interaction
ENSG00000270024	Chromatin interaction

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs11557200	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11985572	0.87[EUR][1000 genomes]
rs11986053	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11986982	0.82[EUR][1000 genomes]
rs11987310	0.87[EUR][1000 genomes]
rs11988465	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11990461	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11990636	0.87[EUR][1000 genomes]
rs11992069	0.87[EUR][1000 genomes]
rs11992605	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11995256	0.87[EUR][1000 genomes]
rs11995814	0.81[EUR][1000 genomes]
rs11996861	0.85[EUR][1000 genomes]
rs11997404	0.82[EUR][1000 genomes]
rs11997967	0.87[EUR][1000 genomes]
rs11998301	0.87[EUR][1000 genomes]
rs12114202	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12114734	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933034	0.90[EUR][1000 genomes]
rs16933039	0.87[EUR][1000 genomes]
rs16933057	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs16933060	0.90[EUR][1000 genomes]
rs16933079	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933080	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933097	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs16933138	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16933139	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16933147	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16933162	0.82[EUR][1000 genomes]
rs16933170	0.82[EUR][1000 genomes]
rs16933173	0.82[EUR][1000 genomes]
rs2168542	0.82[EUR][1000 genomes]
rs2305673	0.82[EUR][1000 genomes]
rs28547325	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35517376	0.87[EUR][1000 genomes]
rs35809374	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3779995	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3857962	0.87[EUR][1000 genomes]
rs3913346	0.85[EUR][1000 genomes]
rs3929419	0.87[EUR][1000 genomes]
rs4073730	0.87[EUR][1000 genomes]
rs55662680	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55865037	0.82[EUR][1000 genomes]
rs55893527	0.87[EUR][1000 genomes]
rs56056216	0.87[EUR][1000 genomes]
rs56215867	0.87[EUR][1000 genomes]
rs56345609	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56717011	0.85[AMR][1000 genomes]
rs57867847	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57894537	0.87[EUR][1000 genomes]
rs58434561	0.87[EUR][1000 genomes]
rs58448590	0.82[EUR][1000 genomes]
rs58653469	0.87[EUR][1000 genomes]
rs58991268	0.83[EUR][1000 genomes]
rs59226286	0.85[EUR][1000 genomes]
rs59335949	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59469156	0.87[EUR][1000 genomes]
rs59634730	0.82[EUR][1000 genomes]
rs60741740	0.87[EUR][1000 genomes]
rs60773515	0.87[EUR][1000 genomes]
rs60894518	0.82[EUR][1000 genomes]
rs61080934	0.87[EUR][1000 genomes]
rs61085456	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472285	0.87[EUR][1000 genomes]
rs6472289	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6651278	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6981761	0.87[EUR][1000 genomes]
rs6982137	0.87[EUR][1000 genomes]
rs6982699	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983632	0.87[EUR][1000 genomes]
rs6984447	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6984568	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6984650	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6985273	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6987597	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6987624	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6990298	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6998252	0.85[EUR][1000 genomes]
rs6998777	0.90[EUR][1000 genomes]
rs7002479	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7015619	0.87[EUR][1000 genomes]
rs7017471	0.87[EUR][1000 genomes]
rs73691182	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs73691185	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73691186	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73691192	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73691193	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73691562	0.87[EUR][1000 genomes]
rs73691565	0.85[EUR][1000 genomes]
rs73691571	0.87[EUR][1000 genomes]
rs73691572	0.87[EUR][1000 genomes]
rs73691578	0.87[EUR][1000 genomes]
rs73691579	0.87[EUR][1000 genomes]
rs73691582	0.82[EUR][1000 genomes]
rs73691586	0.90[EUR][1000 genomes]
rs73691595	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs73693124	0.82[EUR][1000 genomes]
rs73693615	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73693631	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73693632	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7461383	0.82[EUR][1000 genomes]
rs7812425	0.82[EUR][1000 genomes]
rs7812510	0.82[AMR][1000 genomes]
rs7815142	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7815863	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7816827	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7819894	0.85[AMR][1000 genomes]
rs7819895	0.85[AMR][1000 genomes]
rs7820403	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7824775	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7833373	0.82[EUR][1000 genomes]
rs7841884	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7842770	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs979679	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9918869	0.87[EUR][1000 genomes]

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67822600-67836600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:67822800-67834600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:67823000-67833000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:67828800-67833400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:67828800-67834000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr8:67829000-67833400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:67829000-67833400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr8:67829000-67834000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr8:67829000-67835000	Weak transcription	Thymus	Thymus
10	chr8:67829000-67835400	Weak transcription	Spleen	Spleen
11	chr8:67829000-67836800	Weak transcription	Aorta	Aorta
12	chr8:67829200-67833400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr8:67829400-67832800	Weak transcription	Fetal Thymus	thymus
14	chr8:67829400-67833400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr8:67829600-67834800	Weak transcription	Brain Anterior Caudate	brain
16	chr8:67829600-67835200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr8:67829600-67836000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr8:67830000-67833400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:67830000-67834400	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr8:67830200-67833000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr8:67830200-67833800	Weak transcription	HUVEC	blood vessel
22	chr8:67830200-67834400	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr8:67830200-67834400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr8:67830200-67834400	Weak transcription	Right Atrium	heart
25	chr8:67830200-67835200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr8:67830400-67833000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr8:67830400-67833200	Weak transcription	Primary B cells from peripheral blood	blood
28	chr8:67830400-67833400	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr8:67830400-67833400	Weak transcription	Duodenum Mucosa	Duodenum
30	chr8:67830400-67833800	Weak transcription	Primary T cells from cord blood	blood
31	chr8:67830400-67834000	Weak transcription	Fetal Kidney	kidney
32	chr8:67830400-67835200	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr8:67830600-67832800	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr8:67830600-67832800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr8:67830600-67833000	Enhancers	HSMM	muscle
36	chr8:67830600-67833400	Enhancers	Muscle Satellite Cultured Cells	--
37	chr8:67830600-67833400	Enhancers	NHLF	lung
38	chr8:67830600-67833800	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr8:67830800-67832800	Weak transcription	Primary B cells from cord blood	blood
40	chr8:67830800-67833000	Weak transcription	Dnd41	blood
41	chr8:67830800-67833000	Enhancers	NHDF-Ad	bronchial
42	chr8:67830800-67833200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr8:67830800-67833800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr8:67831000-67832800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr8:67831000-67833800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr8:67831000-67835800	Weak transcription	Lung	lung
47	chr8:67831200-67832800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr8:67831200-67832800	Enhancers	A549	lung
49	chr8:67831200-67833400	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr8:67831200-67835800	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links