Variant report

Variant	rs6984650
Chromosome Location	chr8:67848215-67848216
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:67836501..67838485-chr8:67848044..67849613,2	MCF-7	breast:
2	chr8:67846334..67848962-chr8:67976626..67978403,2	K562	blood:
3	chr8:67846820..67850015-chr8:67850754..67852857,4	K562	blood:
4	chr8:67834830..67836360-chr8:67847084..67849974,2	K562	blood:
5	chr8:67834830..67837947-chr8:67847453..67850977,3	K562	blood:
6	chr8:67846820..67850015-chr8:67850754..67852366,3	K562	blood:

Variant related genes	Relation type
ENSG00000104218	Chromatin interaction
ENSG00000121022	Chromatin interaction
ENSG00000245910	Chromatin interaction

Extended variants
information (count: 143 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:143)

rs_ID	r²[population]
rs1138476	1.00[CEU][hapmap];0.82[MEX][hapmap]
rs11557200	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11985037	1.00[CEU][hapmap]
rs11985572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11986053	1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11986982	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs11987280	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11987310	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11988465	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11989855	1.00[CEU][hapmap]
rs11990461	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11990636	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11992069	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11992605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11992626	1.00[CEU][hapmap];0.82[MEX][hapmap]
rs11995256	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11995814	0.90[ASN][1000 genomes]
rs11996861	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11997189	1.00[CEU][hapmap]
rs11997260	1.00[CEU][hapmap]
rs11997404	1.00[CEU][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];0.85[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs11997967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11998301	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12114202	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12114734	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.87[EUR][1000 genomes]
rs16933034	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933036	1.00[CEU][hapmap]
rs16933039	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933065	1.00[CEU][hapmap]
rs16933071	1.00[CEU][hapmap]
rs16933079	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16933080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16933092	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs16933094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]
rs16933097	1.00[CEU][hapmap];0.85[LWK][hapmap];0.88[MKK][hapmap];0.96[YRI][hapmap];0.81[AMR][1000 genomes]
rs16933125	1.00[CEU][hapmap]
rs16933138	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16933139	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16933147	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16933148	1.00[CEU][hapmap];0.82[MEX][hapmap]
rs16933160	1.00[CHB][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs16933162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs16933170	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs16933173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs16933182	0.82[EUR][1000 genomes]
rs16933190	0.80[EUR][1000 genomes]
rs2168542	0.85[EUR][1000 genomes]
rs2290585	0.80[EUR][1000 genomes]
rs2305673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs28547325	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35517376	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35809374	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3779995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3857962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3913346	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3929419	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4073730	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4534119	1.00[CEU][hapmap]
rs4613982	1.00[ASN][1000 genomes]
rs55662680	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55745066	0.80[EUR][1000 genomes]
rs55865037	0.85[EUR][1000 genomes]
rs55893527	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56056216	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56215867	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56345609	0.87[EUR][1000 genomes]
rs57867847	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57894537	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58434561	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58448590	0.85[EUR][1000 genomes]
rs58653469	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58991268	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59226286	0.83[EUR][1000 genomes]
rs59335949	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59469156	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59634730	0.85[EUR][1000 genomes]
rs60666237	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60741740	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60773515	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60894518	0.85[EUR][1000 genomes]
rs61080934	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61085456	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6472285	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472289	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6651278	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6981761	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982137	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982699	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6983632	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6984447	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6984568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6985273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6987597	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6987624	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6987665	1.00[CEU][hapmap]
rs6990298	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6998252	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6998777	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7002183	0.82[ASN][1000 genomes]
rs7002479	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7004549	1.00[CEU][hapmap];0.82[MEX][hapmap]
rs7009678	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7015619	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7017471	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691182	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73691185	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73691186	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73691192	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73691193	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73691557	1.00[ASN][1000 genomes]
rs73691562	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691565	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691571	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691572	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691578	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691579	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691582	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691586	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691595	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73693124	0.85[EUR][1000 genomes]
rs73693615	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73693631	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73693632	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7461383	0.85[EUR][1000 genomes]
rs7812425	0.85[EUR][1000 genomes]
rs7812510	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7815142	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7815863	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7816827	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7819894	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7819895	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7820403	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7820420	1.00[JPT][hapmap]
rs7824775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7833373	0.85[EUR][1000 genomes]
rs7834516	0.80[EUR][1000 genomes]
rs7841884	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7842770	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs979679	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9918866	0.81[AMR][1000 genomes]
rs9918869	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67838000-67855000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:67838400-67852800	Weak transcription	Psoas Muscle	Psoas
3	chr8:67847600-67849800	Weak transcription	K562	blood

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