Variant report

Variant	rs9918866
Chromosome Location	chr8:67635325-67635326
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67624963..67628873-chr8:67634272..67636337,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104205	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11985572	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.82[AMR][1000 genomes]
rs11987280	0.94[AMR][1000 genomes]
rs11987310	0.94[AMR][1000 genomes]
rs11990461	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs11990636	1.00[CHB][hapmap];1.00[GIH][hapmap]
rs11992069	0.94[AMR][1000 genomes]
rs11995256	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.87[AMR][1000 genomes]
rs11996861	1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes]
rs11997967	1.00[CHB][hapmap];0.92[YRI][hapmap];0.82[AMR][1000 genomes]
rs11998301	1.00[CHB][hapmap];0.96[YRI][hapmap];0.94[AMR][1000 genomes]
rs12114734	1.00[CHB][hapmap]
rs1367571	0.80[YRI][hapmap]
rs16933034	1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes]
rs16933039	0.93[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AMR][1000 genomes]
rs16933057	1.00[CHB][hapmap];0.84[YRI][hapmap]
rs16933060	1.00[CHB][hapmap];1.00[GIH][hapmap];0.87[TSI][hapmap]
rs16933079	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes]
rs16933080	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs16933092	1.00[CHB][hapmap]
rs16933094	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs35517376	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.87[AMR][1000 genomes]
rs3779995	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs3857962	1.00[CHB][hapmap];0.96[YRI][hapmap];0.87[AMR][1000 genomes]
rs3913346	1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes]
rs3929419	0.93[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.87[AMR][1000 genomes]
rs4073730	0.81[AMR][1000 genomes]
rs4613982	0.84[AMR][1000 genomes]
rs55893527	0.87[AMR][1000 genomes]
rs56056216	0.87[AMR][1000 genomes]
rs56215867	0.94[AMR][1000 genomes]
rs57894537	0.94[AMR][1000 genomes]
rs58434561	0.94[AMR][1000 genomes]
rs58653469	0.94[AMR][1000 genomes]
rs58991268	0.94[AMR][1000 genomes]
rs59226286	0.87[AMR][1000 genomes]
rs59469156	0.94[AMR][1000 genomes]
rs60741740	0.87[AMR][1000 genomes]
rs60773515	0.87[AMR][1000 genomes]
rs61080934	0.94[AMR][1000 genomes]
rs6472285	1.00[CHB][hapmap];0.92[YRI][hapmap];0.82[AMR][1000 genomes]
rs6981761	0.82[AMR][1000 genomes]
rs6982202	1.00[CEU][hapmap]
rs6983632	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.82[AMR][1000 genomes]
rs6984447	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs6984650	0.81[AMR][1000 genomes]
rs6985273	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs6998252	1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes]
rs6998777	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap]
rs7002479	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap]
rs7015619	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.82[AMR][1000 genomes]
rs7017471	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.87[AMR][1000 genomes]
rs73691562	0.85[AMR][1000 genomes]
rs73691565	0.94[AMR][1000 genomes]
rs73691571	0.87[AMR][1000 genomes]
rs73691572	0.85[AMR][1000 genomes]
rs73691578	0.87[AMR][1000 genomes]
rs73691579	0.87[AMR][1000 genomes]
rs73691582	0.87[AMR][1000 genomes]
rs73691586	0.82[AMR][1000 genomes]
rs979679	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs9918869	0.94[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv831346	chr8:67486555-67675324	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67625600-67640600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:67625600-67643600	Weak transcription	Gastric	stomach
3	chr8:67625800-67650600	Weak transcription	Aorta	Aorta
4	chr8:67626200-67651200	Weak transcription	Right Ventricle	heart
5	chr8:67626200-67657600	Weak transcription	Lung	lung
6	chr8:67626200-67664400	Weak transcription	Ovary	ovary
7	chr8:67626200-67665200	Weak transcription	Fetal Stomach	stomach
8	chr8:67626400-67639800	Weak transcription	Right Atrium	heart
9	chr8:67626600-67643800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr8:67626800-67639400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr8:67626800-67660600	Weak transcription	HSMMtube	muscle
12	chr8:67627000-67638000	Weak transcription	Fetal Intestine Small	intestine
13	chr8:67627200-67650400	Weak transcription	Adipose Nuclei	Adipose
14	chr8:67627200-67660200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr8:67627200-67665600	Weak transcription	Left Ventricle	heart
16	chr8:67627400-67649600	Weak transcription	Fetal Intestine Large	intestine
17	chr8:67628600-67638000	Weak transcription	Osteobl	bone
18	chr8:67628600-67640000	Weak transcription	Pancreas	Pancrea
19	chr8:67628800-67651200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr8:67629000-67650600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr8:67630800-67639600	Weak transcription	Liver	Liver
22	chr8:67632400-67638200	Weak transcription	NH-A	brain
23	chr8:67632600-67635600	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr8:67632600-67650600	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr8:67632600-67662400	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr8:67633600-67639400	Weak transcription	Primary hematopoietic stem cells	blood
27	chr8:67633600-67659600	Weak transcription	Stomach Smooth Muscle	stomach
28	chr8:67633800-67638000	Weak transcription	Brain Angular Gyrus	brain
29	chr8:67633800-67645200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr8:67634200-67635800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr8:67634200-67636000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr8:67634400-67637600	Weak transcription	Brain Substantia Nigra	brain
33	chr8:67634400-67638000	Weak transcription	Brain Anterior Caudate	brain
34	chr8:67634400-67638000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr8:67634400-67638000	Weak transcription	Brain Hippocampus Middle	brain
36	chr8:67634400-67638000	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr8:67634400-67638200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr8:67634400-67638400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr8:67634400-67639600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr8:67634600-67638000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr8:67634600-67638000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr8:67634600-67638400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr8:67634600-67639200	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr8:67635200-67638400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr8:67635200-67639400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr8:67635200-67639600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr8:67635200-67640000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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