Variant report

Variant	rs60741740
Chromosome Location	chr8:67689558-67689559
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:67623840..67628206-chr8:67684536..67689963,10	MCF-7	breast:
2	chr8:67688763..67691724-chr8:67695253..67698238,2	K562	blood:
3	chr8:67681220..67688516-chr8:67689197..67696665,8	MCF-7	breast:
4	chr8:67688763..67692905-chr8:67695253..67699277,4	K562	blood:
5	chr8:67624145..67628067-chr8:67684003..67690579,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104205	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs11985572	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11987280	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11987310	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11988465	0.84[ASN][1000 genomes]
rs11990461	0.92[EUR][1000 genomes]
rs11990636	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11992069	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11995256	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11995814	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11996861	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11997967	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11998301	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12114202	0.84[ASN][1000 genomes]
rs12114734	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16933034	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933039	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933057	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933060	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933079	0.92[EUR][1000 genomes]
rs16933080	0.92[EUR][1000 genomes]
rs16933138	0.84[ASN][1000 genomes]
rs28547325	0.84[ASN][1000 genomes]
rs35517376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35809374	0.87[EUR][1000 genomes]
rs3779995	0.87[EUR][1000 genomes]
rs3857962	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3913346	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3929419	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4073730	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4613982	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55893527	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56056216	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56215867	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56345609	0.97[EUR][1000 genomes]
rs57894537	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58434561	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58653469	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58991268	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59226286	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59469156	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60666237	0.87[EUR][1000 genomes]
rs60773515	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61080934	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61085456	0.90[EUR][1000 genomes]
rs6472285	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472289	0.92[EUR][1000 genomes]
rs6651278	0.92[EUR][1000 genomes]
rs6981761	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982137	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982699	0.87[EUR][1000 genomes]
rs6983632	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6984447	0.92[EUR][1000 genomes]
rs6984650	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6985273	0.92[EUR][1000 genomes]
rs6998252	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6998777	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7002183	0.82[ASN][1000 genomes]
rs7002479	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7015619	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7017471	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691182	0.84[ASN][1000 genomes]
rs73691557	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691562	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691565	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691571	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691572	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691578	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691579	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691582	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691586	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691595	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73693615	0.87[EUR][1000 genomes]
rs73693631	0.92[EUR][1000 genomes]
rs73693632	0.92[EUR][1000 genomes]
rs7815142	0.92[EUR][1000 genomes]
rs7815863	0.87[EUR][1000 genomes]
rs7820403	0.92[EUR][1000 genomes]
rs7824775	0.84[ASN][1000 genomes]
rs7842770	0.87[EUR][1000 genomes]
rs979679	0.87[EUR][1000 genomes]
rs9918866	0.87[AMR][1000 genomes]
rs9918869	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026746	chr8:67639626-67794164	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67687800-67702600	Weak transcription	Spleen	Spleen
2	chr8:67688000-67713800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:67688000-67783000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:67688200-67690000	Enhancers	Fetal Intestine Small	intestine
5	chr8:67688200-67690000	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr8:67688200-67690000	Enhancers	Small Intestine	intestine
7	chr8:67688200-67690600	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr8:67688200-67692600	Weak transcription	Pancreas	Pancrea
9	chr8:67688200-67696400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr8:67688200-67697200	Weak transcription	Gastric	stomach
11	chr8:67688200-67703800	Weak transcription	Lung	lung
12	chr8:67688200-67738000	Weak transcription	HSMM	muscle
13	chr8:67688400-67689600	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr8:67688400-67689600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr8:67688400-67689600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr8:67688400-67689800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr8:67688400-67690200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
18	chr8:67688400-67690600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr8:67688400-67692600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr8:67688400-67695200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr8:67688400-67703000	Weak transcription	Aorta	Aorta
22	chr8:67688400-67706600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr8:67688400-67730400	Weak transcription	HSMMtube	muscle
24	chr8:67688600-67689800	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr8:67688600-67689800	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr8:67688600-67690000	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr8:67688600-67690200	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr8:67688600-67690200	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr8:67688600-67690600	Enhancers	Liver	Liver
30	chr8:67688600-67692800	Weak transcription	Primary hematopoietic stem cells	blood
31	chr8:67688600-67693200	Weak transcription	Fetal Thymus	thymus
32	chr8:67688600-67693800	Weak transcription	NHDF-Ad	bronchial
33	chr8:67688600-67696000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr8:67688600-67696000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr8:67688600-67698000	Weak transcription	Psoas Muscle	Psoas
36	chr8:67688600-67699400	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr8:67688600-67707000	Weak transcription	Thymus	Thymus
38	chr8:67688800-67689600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr8:67688800-67689600	Enhancers	Hela-S3	cervix
40	chr8:67688800-67689800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr8:67688800-67689800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
42	chr8:67688800-67689800	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr8:67688800-67690000	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr8:67688800-67690200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
45	chr8:67688800-67690200	Enhancers	Duodenum Mucosa	Duodenum
46	chr8:67688800-67690200	Enhancers	HepG2	liver
47	chr8:67688800-67691200	Enhancers	Brain Cingulate Gyrus	brain
48	chr8:67688800-67692200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr8:67688800-67695600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr8:67688800-67697200	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links