Variant report

Variant	rs7815863
Chromosome Location	chr8:67834273-67834274
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:67825616..67828276-chr8:67831795..67834715,3	MCF-7	breast:
2	chr8:67827975..67841001-chr8:67966279..67982243,48	K562	blood:
3	chr8:67371439..67373634-chr8:67831898..67834406,2	MCF-7	breast:
4	chr8:67576844..67579511-chr8:67833721..67836936,3	MCF-7	breast:
5	chr8:67828966..67835690-chr8:67939145..67944421,12	MCF-7	breast:
6	chr8:67833327..67839681-chr8:67939129..67942608,10	MCF-7	breast:
7	chr8:67831268..67834338-chr8:67951329..67953528,3	K562	blood:
8	chr8:67831901..67834274-chr8:68007659..68009308,2	K562	blood:
9	chr8:67831819..67834409-chr8:68034635..68036146,2	K562	blood:
10	chr8:67830433..67839604-chr8:67970368..67979371,24	MCF-7	breast:
11	chr8:67830645..67839054-chr8:67969883..67975997,15	MCF-7	breast:
12	chr8:67828671..67841001-chr8:67968948..67981786,43	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TCF24-2	chr8:67834253-67834349	ENSG00000245910

No data

Variant related genes	Relation type
ENSG00000121022	Chromatin interaction
ENSG00000169085	Chromatin interaction
ENSG00000104218	Chromatin interaction
ENSG00000266491	Chromatin interaction
ENSG00000178125	Chromatin interaction
ENSG00000147576	Chromatin interaction
ENSG00000175073	Chromatin interaction

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs11557200	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11985572	0.87[EUR][1000 genomes]
rs11986053	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11986982	0.82[EUR][1000 genomes]
rs11987310	0.87[EUR][1000 genomes]
rs11988465	0.82[EUR][1000 genomes]
rs11990461	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11990636	0.87[EUR][1000 genomes]
rs11992069	0.87[EUR][1000 genomes]
rs11992605	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11995256	0.87[EUR][1000 genomes]
rs11995814	0.81[EUR][1000 genomes]
rs11996861	0.85[EUR][1000 genomes]
rs11997404	0.82[EUR][1000 genomes]
rs11997967	0.87[EUR][1000 genomes]
rs11998301	0.87[EUR][1000 genomes]
rs12114202	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12114734	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933034	0.90[EUR][1000 genomes]
rs16933039	0.87[EUR][1000 genomes]
rs16933057	0.90[EUR][1000 genomes]
rs16933060	0.90[EUR][1000 genomes]
rs16933079	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933080	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933138	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16933139	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16933147	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16933162	0.82[EUR][1000 genomes]
rs16933170	0.82[EUR][1000 genomes]
rs16933173	0.82[EUR][1000 genomes]
rs2168542	0.82[EUR][1000 genomes]
rs2305673	0.82[EUR][1000 genomes]
rs28547325	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35517376	0.87[EUR][1000 genomes]
rs35809374	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3779995	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3857962	0.87[EUR][1000 genomes]
rs3913346	0.85[EUR][1000 genomes]
rs3929419	0.87[EUR][1000 genomes]
rs4073730	0.87[EUR][1000 genomes]
rs55662680	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55865037	0.82[EUR][1000 genomes]
rs55893527	0.87[EUR][1000 genomes]
rs56056216	0.87[EUR][1000 genomes]
rs56215867	0.87[EUR][1000 genomes]
rs56345609	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57867847	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57894537	0.87[EUR][1000 genomes]
rs58434561	0.87[EUR][1000 genomes]
rs58448590	0.82[EUR][1000 genomes]
rs58653469	0.87[EUR][1000 genomes]
rs58991268	0.83[EUR][1000 genomes]
rs59226286	0.85[EUR][1000 genomes]
rs59335949	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59469156	0.87[EUR][1000 genomes]
rs59634730	0.82[EUR][1000 genomes]
rs60666237	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60741740	0.87[EUR][1000 genomes]
rs60773515	0.87[EUR][1000 genomes]
rs60894518	0.82[EUR][1000 genomes]
rs61080934	0.87[EUR][1000 genomes]
rs61085456	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472285	0.87[EUR][1000 genomes]
rs6472289	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6651278	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6981761	0.87[EUR][1000 genomes]
rs6982137	0.87[EUR][1000 genomes]
rs6982699	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983632	0.87[EUR][1000 genomes]
rs6984447	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6984568	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6984650	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6985273	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6987597	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6987624	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6990298	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6998252	0.85[EUR][1000 genomes]
rs6998777	0.90[EUR][1000 genomes]
rs7002479	0.90[EUR][1000 genomes]
rs7015619	0.87[EUR][1000 genomes]
rs7017471	0.87[EUR][1000 genomes]
rs73691182	0.82[EUR][1000 genomes]
rs73691185	0.82[EUR][1000 genomes]
rs73691186	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73691192	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73691193	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73691562	0.87[EUR][1000 genomes]
rs73691565	0.85[EUR][1000 genomes]
rs73691571	0.87[EUR][1000 genomes]
rs73691572	0.87[EUR][1000 genomes]
rs73691578	0.87[EUR][1000 genomes]
rs73691579	0.87[EUR][1000 genomes]
rs73691582	0.82[EUR][1000 genomes]
rs73691586	0.90[EUR][1000 genomes]
rs73691595	0.90[EUR][1000 genomes]
rs73693124	0.82[EUR][1000 genomes]
rs73693615	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73693631	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73693632	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7461383	0.82[EUR][1000 genomes]
rs7812425	0.82[EUR][1000 genomes]
rs7812510	0.84[AMR][1000 genomes]
rs7815142	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7816827	0.82[EUR][1000 genomes]
rs7819894	0.82[AMR][1000 genomes]
rs7819895	0.82[AMR][1000 genomes]
rs7820403	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7824775	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7833373	0.82[EUR][1000 genomes]
rs7841884	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7842770	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs979679	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9918869	0.87[EUR][1000 genomes]

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67822600-67836600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:67822800-67834600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:67829000-67835000	Weak transcription	Thymus	Thymus
4	chr8:67829000-67835400	Weak transcription	Spleen	Spleen
5	chr8:67829000-67836800	Weak transcription	Aorta	Aorta
6	chr8:67829600-67834800	Weak transcription	Brain Anterior Caudate	brain
7	chr8:67829600-67835200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr8:67829600-67836000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr8:67830000-67834400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr8:67830200-67834400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr8:67830200-67834400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr8:67830200-67834400	Weak transcription	Right Atrium	heart
13	chr8:67830200-67835200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr8:67830400-67835200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr8:67831000-67835800	Weak transcription	Lung	lung
16	chr8:67831200-67835800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr8:67831400-67834400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr8:67831400-67835200	Weak transcription	Brain Hippocampus Middle	brain
19	chr8:67831600-67834400	Weak transcription	Small Intestine	intestine
20	chr8:67831600-67835200	Weak transcription	Fetal Stomach	stomach
21	chr8:67831600-67835200	Weak transcription	Ovary	ovary
22	chr8:67831800-67835800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr8:67832000-67835400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr8:67832000-67835400	Weak transcription	Stomach Mucosa	stomach
25	chr8:67832200-67834400	Weak transcription	Colon Smooth Muscle	Colon
26	chr8:67832200-67834600	Weak transcription	Fetal Intestine Small	intestine
27	chr8:67832200-67836000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr8:67832200-67836000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr8:67832400-67834400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr8:67832400-67834400	Strong transcription	Left Ventricle	heart
31	chr8:67832400-67834800	Weak transcription	HSMMtube	muscle
32	chr8:67832600-67834400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr8:67832800-67834400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr8:67832800-67834800	Strong transcription	Primary B cells from cord blood	blood
35	chr8:67832800-67835200	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr8:67832800-67835200	Strong transcription	Fetal Thymus	thymus
37	chr8:67833000-67834400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr8:67833000-67834400	Strong transcription	Dnd41	blood
39	chr8:67833000-67834600	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr8:67833000-67834600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr8:67833000-67835200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr8:67833000-67835200	Genic enhancers	NHDF-Ad	bronchial
43	chr8:67833000-67835400	Genic enhancers	HSMM	muscle
44	chr8:67833200-67834400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr8:67833200-67834400	Strong transcription	Primary B cells from peripheral blood	blood
46	chr8:67833200-67834400	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
47	chr8:67833200-67834400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr8:67833200-67834400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr8:67833200-67834600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr8:67833200-67834600	Strong transcription	Osteobl	bone

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