Variant report

Variant	rs6472289
Chromosome Location	chr8:67776952-67776953
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs11557200	0.85[AMR][1000 genomes]
rs11985572	0.92[EUR][1000 genomes]
rs11986053	0.85[AMR][1000 genomes]
rs11987280	0.84[EUR][1000 genomes]
rs11987310	0.92[EUR][1000 genomes]
rs11988465	0.82[AMR][1000 genomes]
rs11990461	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11990636	0.92[EUR][1000 genomes]
rs11992069	0.92[EUR][1000 genomes]
rs11992605	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11995256	0.92[EUR][1000 genomes]
rs11995814	0.86[EUR][1000 genomes]
rs11996861	0.90[EUR][1000 genomes]
rs11997967	0.92[EUR][1000 genomes]
rs11998301	0.92[EUR][1000 genomes]
rs12114202	0.91[AMR][1000 genomes]
rs12114734	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933034	0.95[EUR][1000 genomes]
rs16933039	0.92[EUR][1000 genomes]
rs16933057	0.95[EUR][1000 genomes]
rs16933060	0.95[EUR][1000 genomes]
rs16933079	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933080	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933097	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs16933138	0.91[AMR][1000 genomes]
rs16933139	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16933147	0.85[AMR][1000 genomes]
rs28547325	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35517376	0.92[EUR][1000 genomes]
rs35809374	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3779995	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3857962	0.92[EUR][1000 genomes]
rs3913346	0.90[EUR][1000 genomes]
rs3929419	0.92[EUR][1000 genomes]
rs4073730	0.92[EUR][1000 genomes]
rs55662680	0.85[AMR][1000 genomes]
rs55893527	0.92[EUR][1000 genomes]
rs56056216	0.92[EUR][1000 genomes]
rs56215867	0.92[EUR][1000 genomes]
rs56345609	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56717011	0.85[AMR][1000 genomes]
rs57867847	0.85[AMR][1000 genomes]
rs57894537	0.92[EUR][1000 genomes]
rs58434561	0.92[EUR][1000 genomes]
rs58653469	0.92[EUR][1000 genomes]
rs58991268	0.88[EUR][1000 genomes]
rs59226286	0.90[EUR][1000 genomes]
rs59335949	0.85[AMR][1000 genomes]
rs59469156	0.92[EUR][1000 genomes]
rs60666237	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60741740	0.92[EUR][1000 genomes]
rs60773515	0.92[EUR][1000 genomes]
rs61080934	0.92[EUR][1000 genomes]
rs61085456	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472285	0.92[EUR][1000 genomes]
rs6651278	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6981761	0.92[EUR][1000 genomes]
rs6982137	0.92[EUR][1000 genomes]
rs6982699	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983632	0.92[EUR][1000 genomes]
rs6984447	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6984568	0.85[AMR][1000 genomes]
rs6984650	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6985273	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6987597	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6987624	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6990298	0.85[AMR][1000 genomes]
rs6998252	0.90[EUR][1000 genomes]
rs6998777	0.95[EUR][1000 genomes]
rs7002479	0.95[EUR][1000 genomes]
rs7015619	0.92[EUR][1000 genomes]
rs7017471	0.92[EUR][1000 genomes]
rs73691185	0.82[AMR][1000 genomes]
rs73691186	0.85[AMR][1000 genomes]
rs73691192	0.85[AMR][1000 genomes]
rs73691193	0.85[AMR][1000 genomes]
rs73691557	0.82[EUR][1000 genomes]
rs73691562	0.92[EUR][1000 genomes]
rs73691565	0.90[EUR][1000 genomes]
rs73691571	0.92[EUR][1000 genomes]
rs73691572	0.92[EUR][1000 genomes]
rs73691578	0.92[EUR][1000 genomes]
rs73691579	0.92[EUR][1000 genomes]
rs73691582	0.87[EUR][1000 genomes]
rs73691586	0.95[EUR][1000 genomes]
rs73691595	0.95[EUR][1000 genomes]
rs73693615	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73693631	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73693632	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7812510	0.82[AMR][1000 genomes]
rs7815142	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7815863	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7816827	0.82[AMR][1000 genomes]
rs7819894	0.85[AMR][1000 genomes]
rs7819895	0.85[AMR][1000 genomes]
rs7820403	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7824775	0.91[AMR][1000 genomes]
rs7841884	0.85[AMR][1000 genomes]
rs7842770	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs979679	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9918869	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026746	chr8:67639626-67794164	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67688000-67783000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:67689000-67782600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr8:67696800-67783000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:67707600-67777000	Weak transcription	Primary B cells from peripheral blood	blood
5	chr8:67707600-67783000	Weak transcription	Gastric	stomach
6	chr8:67711800-67782600	Weak transcription	HepG2	liver
7	chr8:67712200-67777200	Weak transcription	Esophagus	oesophagus
8	chr8:67727000-67777200	Weak transcription	Pancreas	Pancrea
9	chr8:67727000-67782600	Weak transcription	Aorta	Aorta
10	chr8:67744600-67782800	Weak transcription	HSMM	muscle
11	chr8:67753600-67777200	Weak transcription	Spleen	Spleen
12	chr8:67757000-67782400	Weak transcription	Colon Smooth Muscle	Colon
13	chr8:67757400-67782400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:67760600-67783000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:67760800-67782600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr8:67761400-67782600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr8:67761600-67778200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr8:67763200-67782400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:67763400-67782600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr8:67763600-67779800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr8:67764200-67782400	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr8:67767000-67782400	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr8:67767200-67778000	Weak transcription	Brain Cingulate Gyrus	brain
24	chr8:67769600-67782400	Weak transcription	Primary T cells from cord blood	blood
25	chr8:67769800-67782400	Weak transcription	Brain Hippocampus Middle	brain
26	chr8:67770000-67782400	Weak transcription	Brain Substantia Nigra	brain
27	chr8:67770200-67782600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr8:67770200-67782800	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr8:67771200-67782400	Weak transcription	Brain Angular Gyrus	brain
30	chr8:67771200-67782400	Weak transcription	Duodenum Mucosa	Duodenum
31	chr8:67771200-67782400	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr8:67771200-67782800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr8:67771400-67782400	Weak transcription	Adipose Nuclei	Adipose
34	chr8:67771400-67782600	Weak transcription	Brain Anterior Caudate	brain
35	chr8:67771600-67782400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr8:67771600-67782800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr8:67771800-67777200	Weak transcription	Fetal Intestine Large	intestine
38	chr8:67771800-67782600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr8:67772200-67782600	Weak transcription	Primary B cells from cord blood	blood
40	chr8:67772400-67782600	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr8:67772400-67782600	Weak transcription	Liver	Liver
42	chr8:67773400-67782600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr8:67773400-67783000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr8:67774200-67782400	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr8:67776000-67782600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr8:67776000-67782600	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr8:67776600-67782800	Weak transcription	Primary hematopoietic stem cells	blood

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