Variant report

Variant	rs6987597
Chromosome Location	chr8:67925933-67925934
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr8:67925572-67926316	HCT-116	colon:	n/a	n/a
2	JUND	chr8:67925796-67925958	HepG2	liver:	n/a	n/a
3	JUND	chr8:67925637-67926314	HCT-116	colon:	n/a	n/a
4	TEAD4	chr8:67925746-67926096	K562	blood:	n/a	n/a
5	FOSL2	chr8:67925784-67926077	HepG2	liver:	n/a	n/a
6	JUN	chr8:67925769-67926057	K562	blood:	n/a	n/a
7	JUND	chr8:67925701-67926120	K562	blood:	n/a	n/a
8	RCOR1	chr8:67925842-67926094	K562	blood:	n/a	n/a
9	ATF1	chr8:67925766-67926057	K562	blood:	n/a	n/a
10	FOSL1	chr8:67925785-67926003	K562	blood:	n/a	chr8:67925895-67925906
11	JUN	chr8:67925509-67926165	K562	blood:	n/a	n/a
12	ARID3A	chr8:67925901-67926296	K562	blood:	n/a	n/a
13	TEAD4	chr8:67925594-67926247	HCT-116	colon:	n/a	n/a
14	FOSL1	chr8:67925612-67926284	HCT-116	colon:	n/a	chr8:67925895-67925906
15	EP300	chr8:67925807-67926076	K562	blood:	n/a	n/a
16	FOSL1	chr8:67925765-67926139	K562	blood:	n/a	chr8:67925895-67925906
17	TCF7L2	chr8:67925715-67926200	HCT-116	colon:	n/a	n/a
18	FOSL1	chr8:67925639-67926274	HCT-116	colon:	n/a	chr8:67925895-67925906
19	TEAD4	chr8:67925729-67926159	K562	blood:	n/a	n/a
20	TEAD4	chr8:67925778-67926184	HCT-116	colon:	n/a	n/a

Variant related genes	Relation type
PPP1R42	TF binding region

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10504399	0.85[EUR][1000 genomes]
rs11557200	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11986053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11986982	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11988464	0.86[AFR][1000 genomes]
rs11988465	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11990461	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11992605	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11997404	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12114202	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12114734	0.84[ASN][1000 genomes]
rs16919053	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16933079	0.84[ASN][1000 genomes]
rs16933080	0.84[ASN][1000 genomes]
rs16933138	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16933139	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933147	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16933160	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16933162	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16933170	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16933173	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16933182	0.97[EUR][1000 genomes]
rs16933190	0.95[EUR][1000 genomes]
rs16933204	0.85[EUR][1000 genomes]
rs16933214	0.85[EUR][1000 genomes]
rs2168542	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2290585	0.95[EUR][1000 genomes]
rs2305672	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2305673	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28547325	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35809374	0.84[ASN][1000 genomes]
rs3779995	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3780131	0.90[EUR][1000 genomes]
rs55662680	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55737416	0.90[EUR][1000 genomes]
rs55745066	0.95[EUR][1000 genomes]
rs55865037	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55983978	0.90[EUR][1000 genomes]
rs55986624	0.85[EUR][1000 genomes]
rs56101466	0.90[EUR][1000 genomes]
rs56345609	0.84[ASN][1000 genomes]
rs56858183	0.85[EUR][1000 genomes]
rs57101332	0.90[EUR][1000 genomes]
rs57867847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58448590	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59335949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59634730	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59870074	0.81[EUR][1000 genomes]
rs60324950	0.90[EUR][1000 genomes]
rs60666237	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60894518	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61085456	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61193782	0.90[EUR][1000 genomes]
rs6472289	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6651278	0.84[ASN][1000 genomes]
rs6982699	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6984447	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6984568	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6984650	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6985273	0.84[ASN][1000 genomes]
rs6987624	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990298	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6991974	0.90[EUR][1000 genomes]
rs73691182	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73691185	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73691186	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73691192	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73691193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73693124	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73693135	0.84[EUR][1000 genomes]
rs73693152	0.90[EUR][1000 genomes]
rs73693153	0.90[EUR][1000 genomes]
rs73693615	0.84[ASN][1000 genomes]
rs73693631	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs73693632	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7461383	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7812425	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7812510	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7815142	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7815863	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7816827	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7819894	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7819895	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7820403	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7824775	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7833373	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7834516	0.95[EUR][1000 genomes]
rs7841884	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7842770	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs979679	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802652	chr8:67894007-67964309	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1016742	chr8:67917418-68125319	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv539639	chr8:67917418-68125319	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67925800-67926000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:67925800-67926000	Enhancers	NH-A	brain
3	chr8:67925800-67926200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:67925800-67926200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr8:67925800-67926200	Enhancers	HSMM	muscle

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