Variant report

Variant	rs73693152
Chromosome Location	chr8:68144543-68144544
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:68143776..68146579-chr8:68148477..68150558,2	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10504399	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11557200	0.90[EUR][1000 genomes]
rs11986053	0.90[EUR][1000 genomes]
rs11986982	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11988465	0.90[EUR][1000 genomes]
rs11997404	0.90[EUR][1000 genomes]
rs12114202	0.90[EUR][1000 genomes]
rs12678025	0.80[AFR][1000 genomes]
rs16919053	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933138	0.90[EUR][1000 genomes]
rs16933139	0.90[EUR][1000 genomes]
rs16933147	0.90[EUR][1000 genomes]
rs16933160	0.85[EUR][1000 genomes]
rs16933162	0.90[EUR][1000 genomes]
rs16933170	0.90[EUR][1000 genomes]
rs16933173	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs16933182	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933190	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933204	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16933214	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2168542	0.90[EUR][1000 genomes]
rs2290585	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2305672	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2305673	0.90[EUR][1000 genomes]
rs3780131	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55662680	0.90[EUR][1000 genomes]
rs55737416	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55745066	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55865037	0.90[EUR][1000 genomes]
rs55983978	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55986624	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56101466	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56858183	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57101332	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57867847	0.90[EUR][1000 genomes]
rs58448590	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs58715460	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59335949	0.90[EUR][1000 genomes]
rs59634730	0.90[EUR][1000 genomes]
rs59870074	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60324950	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60894518	0.90[EUR][1000 genomes]
rs61193782	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6984568	0.90[EUR][1000 genomes]
rs6987597	0.90[EUR][1000 genomes]
rs6987624	0.90[EUR][1000 genomes]
rs6990298	0.90[EUR][1000 genomes]
rs6991974	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72654960	0.80[AFR][1000 genomes]
rs73691182	0.90[EUR][1000 genomes]
rs73691185	0.90[EUR][1000 genomes]
rs73691186	0.90[EUR][1000 genomes]
rs73691192	0.90[EUR][1000 genomes]
rs73691193	0.90[EUR][1000 genomes]
rs73693124	0.90[EUR][1000 genomes]
rs73693135	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73693153	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7461383	0.90[EUR][1000 genomes]
rs7812425	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7812510	0.87[EUR][1000 genomes]
rs7816827	0.90[EUR][1000 genomes]
rs7819894	0.87[EUR][1000 genomes]
rs7819895	0.87[EUR][1000 genomes]
rs7822754	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7823436	0.80[AFR][1000 genomes]
rs7824775	0.90[EUR][1000 genomes]
rs7833373	0.90[EUR][1000 genomes]
rs7834516	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7841884	0.90[EUR][1000 genomes]
rs7846677	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68100800-68152600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:68101200-68144800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:68103000-68151400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr8:68103600-68158200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:68104600-68193000	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr8:68104600-68215600	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr8:68104800-68151200	Strong transcription	Primary T cells fromperipheralblood	blood
8	chr8:68104800-68152000	Strong transcription	Fetal Thymus	thymus
9	chr8:68104800-68159600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr8:68104800-68182400	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr8:68105000-68184400	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr8:68105600-68158800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr8:68113000-68172600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr8:68117000-68154200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:68119000-68157200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr8:68123400-68145600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr8:68127600-68148800	Weak transcription	NHEK	skin
18	chr8:68128000-68154200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr8:68128200-68148800	Weak transcription	Pancreas	Pancrea
20	chr8:68129000-68154000	Weak transcription	Gastric	stomach
21	chr8:68130400-68148800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr8:68134600-68145600	Strong transcription	Duodenum Mucosa	Duodenum
23	chr8:68135000-68151400	Strong transcription	Primary hematopoietic stem cells	blood
24	chr8:68135200-68156000	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr8:68135200-68184400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr8:68135600-68146200	Weak transcription	HepG2	liver
27	chr8:68135800-68147600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr8:68135800-68148200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr8:68135800-68154000	Weak transcription	Esophagus	oesophagus
30	chr8:68136000-68149000	Weak transcription	Fetal Heart	heart
31	chr8:68136000-68154000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr8:68136000-68154800	Weak transcription	Stomach Mucosa	stomach
33	chr8:68136200-68145600	Weak transcription	Fetal Intestine Small	intestine
34	chr8:68136200-68147600	Weak transcription	Fetal Stomach	stomach
35	chr8:68136200-68147800	Weak transcription	Lung	lung
36	chr8:68136200-68154000	Weak transcription	Spleen	Spleen
37	chr8:68136600-68148800	Weak transcription	Brain Hippocampus Middle	brain
38	chr8:68136800-68148800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr8:68136800-68148800	Weak transcription	Brain Cingulate Gyrus	brain
40	chr8:68139000-68149200	Weak transcription	Psoas Muscle	Psoas
41	chr8:68139000-68154000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr8:68139000-68178000	Weak transcription	Small Intestine	intestine
43	chr8:68139200-68148800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr8:68139200-68148800	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr8:68139200-68154200	Weak transcription	Aorta	Aorta
46	chr8:68139200-68155000	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr8:68139400-68146000	Weak transcription	HSMMtube	muscle
48	chr8:68139400-68148200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr8:68139600-68146000	Weak transcription	Brain Anterior Caudate	brain
50	chr8:68139600-68147800	Weak transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links