Variant report

Variant	rs58715460
Chromosome Location	chr8:68183618-68183619
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:68177199..68178812-chr8:68181191..68183776,2	K562	blood:
2	chr8:68182907..68185887-chr8:68256451..68259285,2	K562	blood:
3	chr8:68167279..68170535-chr8:68180951..68183739,3	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10504399	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11557200	0.85[EUR][1000 genomes]
rs11986053	0.85[EUR][1000 genomes]
rs11986982	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11997404	0.85[EUR][1000 genomes]
rs12678025	0.85[AFR][1000 genomes]
rs12679614	0.81[AFR][1000 genomes]
rs16919053	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933139	0.85[EUR][1000 genomes]
rs16933147	0.85[EUR][1000 genomes]
rs16933160	0.80[EUR][1000 genomes]
rs16933162	0.85[EUR][1000 genomes]
rs16933170	0.85[EUR][1000 genomes]
rs16933173	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs16933182	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933190	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933204	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16933214	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1821026	0.82[AFR][1000 genomes]
rs2168542	0.85[EUR][1000 genomes]
rs2290585	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2305672	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2305673	0.85[EUR][1000 genomes]
rs35904049	0.80[AFR][1000 genomes]
rs3780131	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55662680	0.85[EUR][1000 genomes]
rs55737416	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55745066	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55865037	0.85[EUR][1000 genomes]
rs55983978	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55986624	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56101466	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56858183	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57101332	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57867847	0.85[EUR][1000 genomes]
rs58448590	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs59335949	0.85[EUR][1000 genomes]
rs59634730	0.85[EUR][1000 genomes]
rs59870074	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60324950	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60894518	0.85[EUR][1000 genomes]
rs61193782	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6984568	0.85[EUR][1000 genomes]
rs6987624	0.85[EUR][1000 genomes]
rs6990298	0.85[EUR][1000 genomes]
rs6991974	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6993324	0.84[AFR][1000 genomes]
rs72654960	0.85[AFR][1000 genomes]
rs73691185	0.85[EUR][1000 genomes]
rs73691186	0.85[EUR][1000 genomes]
rs73691192	0.85[EUR][1000 genomes]
rs73691193	0.85[EUR][1000 genomes]
rs73693124	0.85[EUR][1000 genomes]
rs73693135	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73693152	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73693153	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7461383	0.85[EUR][1000 genomes]
rs7812425	0.85[EUR][1000 genomes]
rs7812510	0.82[EUR][1000 genomes]
rs7816827	0.85[EUR][1000 genomes]
rs7819894	0.82[EUR][1000 genomes]
rs7819895	0.82[EUR][1000 genomes]
rs7822754	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7823436	0.85[AFR][1000 genomes]
rs7833373	0.85[EUR][1000 genomes]
rs7834516	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7841884	0.85[EUR][1000 genomes]
rs7846677	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68104600-68193000	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr8:68104600-68215600	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr8:68105000-68184400	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr8:68135200-68184400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr8:68155600-68193800	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr8:68155800-68226000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr8:68159000-68221400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr8:68162400-68192800	Weak transcription	Gastric	stomach
9	chr8:68162400-68231000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr8:68162600-68184200	Weak transcription	Spleen	Spleen
11	chr8:68163200-68198400	Weak transcription	HepG2	liver
12	chr8:68165000-68202400	Weak transcription	Colonic Mucosa	Colon
13	chr8:68166400-68213600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr8:68172000-68210800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr8:68173600-68236400	Weak transcription	Stomach Mucosa	stomach
16	chr8:68174000-68225600	Weak transcription	Esophagus	oesophagus
17	chr8:68174200-68184400	Weak transcription	Fetal Intestine Small	intestine
18	chr8:68174200-68190800	Weak transcription	Fetal Stomach	stomach
19	chr8:68174200-68208800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr8:68174200-68211800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr8:68174400-68199200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr8:68174600-68192400	Weak transcription	Pancreas	Pancrea
23	chr8:68174600-68199200	Weak transcription	Brain Angular Gyrus	brain
24	chr8:68175000-68219400	Weak transcription	Right Ventricle	heart
25	chr8:68175800-68186200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr8:68175800-68188000	Weak transcription	NHEK	skin
27	chr8:68175800-68198200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr8:68175800-68199200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr8:68176000-68186000	Weak transcription	Fetal Brain Male	brain
30	chr8:68176000-68197000	Weak transcription	Lung	lung
31	chr8:68176000-68219800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr8:68176600-68197600	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr8:68177200-68199600	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr8:68177400-68197000	Weak transcription	Aorta	Aorta
35	chr8:68177400-68204000	Weak transcription	NHLF	lung
36	chr8:68177800-68198600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr8:68178000-68199200	Weak transcription	Brain Substantia Nigra	brain
38	chr8:68178200-68189400	Weak transcription	Rectal Smooth Muscle	rectum
39	chr8:68178200-68189800	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr8:68178200-68192400	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr8:68178200-68197600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr8:68178400-68188200	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr8:68178400-68188800	Weak transcription	Fetal Kidney	kidney
44	chr8:68178400-68188800	Weak transcription	Left Ventricle	heart
45	chr8:68178400-68196400	Weak transcription	Brain Germinal Matrix	brain
46	chr8:68178400-68197400	Weak transcription	Brain Hippocampus Middle	brain
47	chr8:68178400-68199200	Weak transcription	Fetal Brain Female	brain
48	chr8:68178800-68188200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr8:68178800-68188200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr8:68178800-68191200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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