Variant report

Variant	rs7846677
Chromosome Location	chr8:68198845-68198846
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10504399	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11557200	0.85[EUR][1000 genomes]
rs11986053	0.85[EUR][1000 genomes]
rs11986982	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[EUR][1000 genomes]
rs11992626	0.82[MEX][hapmap]
rs11997404	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.85[EUR][1000 genomes]
rs12678025	0.83[AFR][1000 genomes]
rs12679614	0.83[AFR][1000 genomes]
rs1466283	0.82[MEX][hapmap]
rs16919053	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933147	0.85[EUR][1000 genomes]
rs16933160	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.80[EUR][1000 genomes]
rs16933162	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.85[EUR][1000 genomes]
rs16933170	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.85[EUR][1000 genomes]
rs16933173	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.85[EUR][1000 genomes]
rs16933178	0.82[MEX][hapmap]
rs16933182	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933190	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933204	1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16933214	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1808140	1.00[JPT][hapmap]
rs1821026	0.85[AFR][1000 genomes]
rs2168542	0.85[EUR][1000 genomes]
rs2290585	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2290586	1.00[JPT][hapmap]
rs2305672	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2305673	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.85[EUR][1000 genomes]
rs3780131	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4364616	1.00[JPT][hapmap]
rs55662680	0.85[EUR][1000 genomes]
rs55737416	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55745066	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55865037	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs55983978	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55986624	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56101466	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56858183	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57101332	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57867847	0.85[EUR][1000 genomes]
rs58448590	0.85[EUR][1000 genomes]
rs58715460	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59335949	0.85[EUR][1000 genomes]
rs59634730	0.85[EUR][1000 genomes]
rs59870074	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60324950	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60894518	0.85[EUR][1000 genomes]
rs61193782	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6984568	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.85[EUR][1000 genomes]
rs6984597	1.00[JPT][hapmap]
rs6988547	1.00[JPT][hapmap]
rs6990298	0.85[EUR][1000 genomes]
rs6991974	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6993324	0.82[AFR][1000 genomes]
rs6998170	1.00[JPT][hapmap]
rs7003018	1.00[JPT][hapmap]
rs7004549	0.82[MEX][hapmap]
rs7008877	1.00[JPT][hapmap]
rs72654960	0.83[AFR][1000 genomes]
rs73691185	0.85[EUR][1000 genomes]
rs73691186	0.85[EUR][1000 genomes]
rs73691192	0.85[EUR][1000 genomes]
rs73691193	0.85[EUR][1000 genomes]
rs73693124	0.85[EUR][1000 genomes]
rs73693135	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73693152	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73693153	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7461383	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.85[EUR][1000 genomes]
rs7812425	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7816827	0.85[EUR][1000 genomes]
rs7822754	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7823436	0.83[AFR][1000 genomes]
rs7831052	1.00[CEU][hapmap]
rs7833373	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7833956	1.00[JPT][hapmap]
rs7834516	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7841884	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.85[EUR][1000 genomes]
rs7842960	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv1839724	chr8:68195817-68346693	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68104600-68215600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr8:68155800-68226000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr8:68159000-68221400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr8:68162400-68231000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:68165000-68202400	Weak transcription	Colonic Mucosa	Colon
6	chr8:68166400-68213600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr8:68172000-68210800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr8:68173600-68236400	Weak transcription	Stomach Mucosa	stomach
9	chr8:68174000-68225600	Weak transcription	Esophagus	oesophagus
10	chr8:68174200-68208800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:68174200-68211800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:68174400-68199200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr8:68174600-68199200	Weak transcription	Brain Angular Gyrus	brain
14	chr8:68175000-68219400	Weak transcription	Right Ventricle	heart
15	chr8:68175800-68199200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr8:68176000-68219800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:68177200-68199600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr8:68177400-68204000	Weak transcription	NHLF	lung
19	chr8:68178000-68199200	Weak transcription	Brain Substantia Nigra	brain
20	chr8:68178400-68199200	Weak transcription	Fetal Brain Female	brain
21	chr8:68178800-68199000	Weak transcription	Brain Anterior Caudate	brain
22	chr8:68178800-68199200	Weak transcription	A549	lung
23	chr8:68178800-68207000	Weak transcription	Hela-S3	cervix
24	chr8:68179200-68221600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr8:68181200-68199000	Weak transcription	HSMMtube	muscle
26	chr8:68184000-68199200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr8:68184400-68199200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr8:68185200-68201400	Weak transcription	Fetal Intestine Small	intestine
29	chr8:68186400-68213800	Strong transcription	HUES48 Cell Line	embryonic stem cell
30	chr8:68187200-68214000	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr8:68187800-68214200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr8:68189600-68202400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr8:68190000-68199400	Weak transcription	K562	blood
34	chr8:68190400-68199200	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr8:68190600-68202200	Weak transcription	Fetal Brain Male	brain
36	chr8:68191600-68199200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr8:68192200-68199000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr8:68193000-68211800	Weak transcription	Pancreas	Pancrea
39	chr8:68193000-68218400	Weak transcription	Gastric	stomach
40	chr8:68193600-68199200	Weak transcription	Fetal Heart	heart
41	chr8:68194400-68213400	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr8:68195200-68200400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr8:68195200-68213000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr8:68195200-68213200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr8:68195400-68200600	Strong transcription	Placenta	Placenta
46	chr8:68195400-68213200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr8:68195400-68213600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr8:68195400-68214400	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr8:68195600-68214000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr8:68195600-68214200	Strong transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links