Variant report

Variant	rs4364616
Chromosome Location	chr8:68154344-68154345
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:68154344-68154458	Gliobla	brain:	n/a	n/a
2	POLR2A	chr8:68153883-68154408	K562	blood:	n/a	n/a

Variant related genes	Relation type
ARFGEF1	TF binding region

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10091514	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10100536	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11986053	1.00[JPT][hapmap]
rs11986982	1.00[JPT][hapmap]
rs11997404	1.00[JPT][hapmap]
rs1378999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919053	1.00[JPT][hapmap]
rs16933132	0.87[EUR][1000 genomes]
rs16933160	1.00[JPT][hapmap]
rs16933162	1.00[JPT][hapmap]
rs16933170	1.00[JPT][hapmap]
rs16933173	1.00[JPT][hapmap]
rs16933182	1.00[JPT][hapmap]
rs16933190	1.00[JPT][hapmap]
rs16933204	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16933259	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933277	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17842082	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1808140	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2290585	1.00[JPT][hapmap]
rs2290586	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2290587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2305672	1.00[JPT][hapmap]
rs2305673	1.00[JPT][hapmap]
rs28502563	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58904549	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61403252	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6984568	1.00[JPT][hapmap]
rs6984597	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6986871	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988019	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6988547	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990298	1.00[JPT][hapmap]
rs6990696	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6991974	1.00[JPT][hapmap]
rs6998170	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs7000650	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs7003018	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs7004391	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7005014	0.87[EUR][1000 genomes]
rs7008877	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7009678	1.00[JPT][hapmap]
rs7018327	0.87[EUR][1000 genomes]
rs7461383	1.00[JPT][hapmap]
rs7812859	1.00[GIH][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7828748	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7833956	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs7834516	1.00[JPT][hapmap]
rs7841884	1.00[JPT][hapmap]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68103600-68158200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr8:68104600-68193000	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr8:68104600-68215600	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr8:68104800-68159600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:68104800-68182400	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr8:68105000-68184400	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr8:68105600-68158800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr8:68113000-68172600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr8:68119000-68157200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:68135200-68156000	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr8:68135200-68184400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr8:68136000-68154800	Weak transcription	Stomach Mucosa	stomach
13	chr8:68139000-68178000	Weak transcription	Small Intestine	intestine
14	chr8:68139200-68155000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr8:68139600-68161400	Weak transcription	Fetal Brain Male	brain
16	chr8:68139800-68154800	Weak transcription	Fetal Kidney	kidney
17	chr8:68139800-68154800	Weak transcription	K562	blood
18	chr8:68139800-68162200	Weak transcription	A549	lung
19	chr8:68140400-68155200	Weak transcription	Hela-S3	cervix
20	chr8:68142000-68158800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr8:68142800-68155000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr8:68143600-68154400	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr8:68143600-68156000	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr8:68143800-68158600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr8:68146000-68157400	Strong transcription	Adipose Nuclei	Adipose
26	chr8:68146000-68168200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr8:68147800-68154400	Weak transcription	Brain Germinal Matrix	brain
28	chr8:68148800-68156200	Strong transcription	Duodenum Mucosa	Duodenum
29	chr8:68149000-68155000	Weak transcription	Pancreas	Pancrea
30	chr8:68149000-68157400	Weak transcription	HUVEC	blood vessel
31	chr8:68149600-68167200	Weak transcription	Fetal Heart	heart
32	chr8:68149800-68173000	Weak transcription	Psoas Muscle	Psoas
33	chr8:68150200-68154800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr8:68150400-68154600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr8:68150600-68161600	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr8:68150800-68154600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr8:68150800-68154600	Weak transcription	Rectal Smooth Muscle	rectum
38	chr8:68150800-68154800	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr8:68150800-68157400	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr8:68151000-68154800	Weak transcription	Fetal Lung	lung
41	chr8:68151000-68155000	Weak transcription	HMEC	breast
42	chr8:68151200-68154400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr8:68151200-68154800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr8:68151200-68155000	Weak transcription	Osteobl	bone
45	chr8:68151200-68159800	Weak transcription	HSMMtube	muscle
46	chr8:68151200-68161000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr8:68151200-68161000	Weak transcription	HSMM	muscle
48	chr8:68151200-68161000	Weak transcription	NH-A	brain
49	chr8:68151800-68154600	Weak transcription	NHLF	lung
50	chr8:68151800-68155800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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