Variant report

Variant	rs28502563
Chromosome Location	chr8:68299638-68299639
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:68293493..68295544-chr8:68298316..68299961,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10091514	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10100536	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1378999	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16933259	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16933277	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17842082	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1808140	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2290586	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2290587	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4364616	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57438989	0.82[EUR][1000 genomes]
rs58904549	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61403252	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6415606	0.82[EUR][1000 genomes]
rs6472300	0.82[EUR][1000 genomes]
rs6472301	0.82[EUR][1000 genomes]
rs6472302	0.82[EUR][1000 genomes]
rs6472303	0.82[EUR][1000 genomes]
rs6472306	0.82[EUR][1000 genomes]
rs6472307	0.82[EUR][1000 genomes]
rs6472308	0.82[EUR][1000 genomes]
rs6986871	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6988019	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988547	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6990696	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6992371	0.82[EUR][1000 genomes]
rs7004391	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7005010	0.82[EUR][1000 genomes]
rs7008877	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7009065	0.82[EUR][1000 genomes]
rs73258696	0.82[EUR][1000 genomes]
rs73258699	0.82[EUR][1000 genomes]
rs73262605	0.82[EUR][1000 genomes]
rs73262624	0.82[EUR][1000 genomes]
rs73262636	0.82[EUR][1000 genomes]
rs73262638	0.82[EUR][1000 genomes]
rs73262648	0.82[EUR][1000 genomes]
rs7812859	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7824691	0.82[EUR][1000 genomes]
rs7839073	0.82[EUR][1000 genomes]
rs7842960	0.82[EUR][1000 genomes]
rs7844794	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv1839724	chr8:68195817-68346693	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1024135	chr8:68235792-68629789	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv539642	chr8:68235792-68629789	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv2752264	chr8:68244546-68647201	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68283400-68314000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:68297400-68301000	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr8:68297400-68301400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr8:68297800-68300400	Weak transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links