Variant report

Variant	rs6988547
Chromosome Location	chr8:68141421-68141422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10091514	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10100536	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11986053	1.00[JPT][hapmap]
rs11986982	1.00[JPT][hapmap]
rs11997404	1.00[JPT][hapmap]
rs1378999	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919053	1.00[JPT][hapmap]
rs16933132	1.00[EUR][1000 genomes]
rs16933160	1.00[JPT][hapmap]
rs16933162	1.00[JPT][hapmap]
rs16933170	1.00[JPT][hapmap]
rs16933173	1.00[JPT][hapmap]
rs16933182	1.00[JPT][hapmap]
rs16933190	1.00[JPT][hapmap]
rs16933204	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16933259	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933277	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17842082	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1808140	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2290585	1.00[JPT][hapmap]
rs2290586	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2290587	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2305672	1.00[JPT][hapmap]
rs2305673	1.00[JPT][hapmap]
rs28502563	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4072321	0.88[EUR][1000 genomes]
rs4364616	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58904549	0.92[ASN][1000 genomes]
rs61403252	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6984568	1.00[JPT][hapmap]
rs6984597	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6986871	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988019	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6990298	1.00[JPT][hapmap]
rs6990696	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6991974	1.00[JPT][hapmap]
rs6998170	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7000650	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7003018	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7004391	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7005014	1.00[EUR][1000 genomes]
rs7008877	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7009678	1.00[JPT][hapmap]
rs7018327	1.00[EUR][1000 genomes]
rs7461383	1.00[JPT][hapmap]
rs7812859	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7819894	1.00[JPT][hapmap]
rs7819895	1.00[JPT][hapmap];1.00[MEX][hapmap]
rs7828748	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7833956	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7834516	1.00[JPT][hapmap]
rs7841884	1.00[JPT][hapmap]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68100800-68152600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:68101200-68144200	Strong transcription	Liver	Liver
3	chr8:68101200-68144800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:68103000-68151400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr8:68103600-68158200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:68104600-68142400	Strong transcription	Adipose Nuclei	Adipose
7	chr8:68104600-68193000	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr8:68104600-68215600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr8:68104800-68151200	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr8:68104800-68152000	Strong transcription	Fetal Thymus	thymus
11	chr8:68104800-68159600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr8:68104800-68182400	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr8:68105000-68184400	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr8:68105600-68158800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr8:68113000-68172600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr8:68117000-68154200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:68118000-68143600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr8:68119000-68157200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:68123400-68145600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr8:68127600-68148800	Weak transcription	NHEK	skin
21	chr8:68128000-68154200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr8:68128200-68148800	Weak transcription	Pancreas	Pancrea
23	chr8:68129000-68154000	Weak transcription	Gastric	stomach
24	chr8:68130400-68148800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr8:68131800-68142400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr8:68132400-68142600	Strong transcription	Fetal Muscle Trunk	muscle
27	chr8:68132600-68142400	Strong transcription	Primary B cells from peripheral blood	blood
28	chr8:68134400-68141800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr8:68134600-68145600	Strong transcription	Duodenum Mucosa	Duodenum
30	chr8:68134800-68141600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr8:68134800-68142800	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr8:68135000-68143600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr8:68135000-68144200	Strong transcription	Primary B cells from cord blood	blood
34	chr8:68135000-68151400	Strong transcription	Primary hematopoietic stem cells	blood
35	chr8:68135200-68142200	Strong transcription	GM12878-XiMat	blood
36	chr8:68135200-68144200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr8:68135200-68156000	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr8:68135200-68184400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr8:68135600-68146200	Weak transcription	HepG2	liver
40	chr8:68135800-68147600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr8:68135800-68148200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr8:68135800-68154000	Weak transcription	Esophagus	oesophagus
43	chr8:68136000-68149000	Weak transcription	Fetal Heart	heart
44	chr8:68136000-68154000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr8:68136000-68154800	Weak transcription	Stomach Mucosa	stomach
46	chr8:68136200-68145600	Weak transcription	Fetal Intestine Small	intestine
47	chr8:68136200-68147600	Weak transcription	Fetal Stomach	stomach
48	chr8:68136200-68147800	Weak transcription	Lung	lung
49	chr8:68136200-68154000	Weak transcription	Spleen	Spleen
50	chr8:68136600-68148800	Weak transcription	Brain Hippocampus Middle	brain

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