Variant report

Variant	rs2290587
Chromosome Location	chr8:68177826-68177827
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:68177199..68178812-chr8:68181191..68183776,2	K562	blood:
2	chr8:68175604..68178573-chr8:68185539..68188085,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10091514	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10100536	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11986053	1.00[JPT][hapmap]
rs11986982	1.00[JPT][hapmap]
rs11997404	1.00[JPT][hapmap]
rs1378999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919053	1.00[JPT][hapmap]
rs16933160	1.00[JPT][hapmap]
rs16933162	1.00[JPT][hapmap]
rs16933170	1.00[JPT][hapmap]
rs16933173	1.00[JPT][hapmap]
rs16933182	1.00[JPT][hapmap]
rs16933190	1.00[JPT][hapmap]
rs16933204	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16933259	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933277	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17842082	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1808140	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2290585	1.00[JPT][hapmap]
rs2290586	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2305672	1.00[JPT][hapmap]
rs2305673	1.00[JPT][hapmap]
rs28502563	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4364616	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58904549	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61403252	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6472307	1.00[CHD][hapmap]
rs6984568	1.00[JPT][hapmap]
rs6984597	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6986871	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988019	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6988547	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990298	1.00[JPT][hapmap]
rs6990696	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6991974	1.00[JPT][hapmap]
rs6998170	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs7000650	0.87[EUR][1000 genomes]
rs7003018	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs7004391	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7008877	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7009678	1.00[JPT][hapmap]
rs7018327	0.87[EUR][1000 genomes]
rs7461383	1.00[JPT][hapmap]
rs7812859	1.00[GIH][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7828748	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7833956	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs7834516	1.00[JPT][hapmap]
rs7841884	1.00[JPT][hapmap]
rs7842960	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68104600-68193000	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr8:68104600-68215600	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr8:68104800-68182400	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr8:68105000-68184400	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr8:68135200-68184400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr8:68139000-68178000	Weak transcription	Small Intestine	intestine
7	chr8:68153600-68181000	Strong transcription	Rectal Mucosa Donor 31	rectum
8	chr8:68155000-68179200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr8:68155600-68193800	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr8:68155800-68226000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr8:68157600-68181400	Strong transcription	Primary B cells from cord blood	blood
12	chr8:68157800-68181000	Strong transcription	Primary T helper cells PMA-I stimulated	--
13	chr8:68158000-68181400	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr8:68159000-68180600	Strong transcription	Liver	Liver
15	chr8:68159000-68221400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr8:68159400-68181000	Strong transcription	Primary T cells from cord blood	blood
17	chr8:68159600-68180800	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr8:68159600-68180800	Strong transcription	Dnd41	blood
19	chr8:68159600-68181000	Strong transcription	Primary B cells from peripheral blood	blood
20	chr8:68159800-68179800	Strong transcription	Adipose Nuclei	Adipose
21	chr8:68159800-68180000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr8:68160000-68178800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr8:68160400-68181000	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr8:68160800-68181000	Strong transcription	Duodenum Mucosa	Duodenum
25	chr8:68161000-68181200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr8:68161400-68181200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr8:68161600-68181000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr8:68162000-68181400	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr8:68162400-68192800	Weak transcription	Gastric	stomach
30	chr8:68162400-68231000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr8:68162600-68184200	Weak transcription	Spleen	Spleen
32	chr8:68163200-68178000	Weak transcription	A549	lung
33	chr8:68163200-68198400	Weak transcription	HepG2	liver
34	chr8:68165000-68202400	Weak transcription	Colonic Mucosa	Colon
35	chr8:68166200-68178000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr8:68166200-68179400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr8:68166400-68181200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr8:68166400-68213600	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr8:68166600-68178800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr8:68166600-68181400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr8:68166800-68181200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr8:68169000-68178200	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr8:68169000-68179800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr8:68169200-68178400	Strong transcription	Brain Germinal Matrix	brain
45	chr8:68169200-68178800	Strong transcription	Fetal Intestine Large	intestine
46	chr8:68169200-68178800	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr8:68169200-68179000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr8:68169200-68181200	Strong transcription	Fetal Thymus	thymus
49	chr8:68170800-68178400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr8:68170800-68178800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links