Variant report

Variant	rs16933259
Chromosome Location	chr8:68220673-68220674
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:67974959..67977039-chr8:68219146..68220853,2	K562	blood:
2	chr8:68211004..68214267-chr8:68215813..68220684,4	MCF-7	breast:
3	chr8:68213873..68216751-chr8:68219883..68222658,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000121022	Chromatin interaction
ENSG00000104218	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10091514	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10100536	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1378999	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933277	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17842082	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1808140	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2290586	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2290587	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28502563	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4364616	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58904549	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61403252	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6984597	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6986871	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988019	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6988547	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990696	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6998170	0.87[EUR][1000 genomes]
rs7003018	0.87[EUR][1000 genomes]
rs7004391	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7008877	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7018327	0.87[EUR][1000 genomes]
rs7812859	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7833956	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv1839724	chr8:68195817-68346693	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68155800-68226000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr8:68159000-68221400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr8:68162400-68231000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:68173600-68236400	Weak transcription	Stomach Mucosa	stomach
5	chr8:68174000-68225600	Weak transcription	Esophagus	oesophagus
6	chr8:68179200-68221600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr8:68197800-68234200	Weak transcription	Aorta	Aorta
8	chr8:68208800-68226000	Weak transcription	A549	lung
9	chr8:68209600-68252400	Weak transcription	Fetal Kidney	kidney
10	chr8:68209800-68221400	Weak transcription	Fetal Brain Female	brain
11	chr8:68210800-68225600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr8:68210800-68225800	Weak transcription	K562	blood
13	chr8:68211600-68240800	Weak transcription	Fetal Brain Male	brain
14	chr8:68212000-68225200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr8:68212200-68221200	Weak transcription	Fetal Muscle Leg	muscle
16	chr8:68212200-68221800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr8:68212200-68225800	Weak transcription	Spleen	Spleen
18	chr8:68212200-68229000	Weak transcription	HepG2	liver
19	chr8:68212400-68228200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr8:68212800-68221200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr8:68212800-68225800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr8:68212800-68252400	Weak transcription	Hela-S3	cervix
23	chr8:68213000-68225400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr8:68213000-68225800	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr8:68213200-68222200	Weak transcription	Fetal Stomach	stomach
26	chr8:68213200-68229000	Weak transcription	Small Intestine	intestine
27	chr8:68213400-68225600	Weak transcription	Brain Germinal Matrix	brain
28	chr8:68213600-68225000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr8:68213600-68225200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr8:68213600-68225600	Weak transcription	Fetal Muscle Trunk	muscle
31	chr8:68213600-68225800	Weak transcription	Pancreas	Pancrea
32	chr8:68213800-68220800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr8:68213800-68221400	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr8:68213800-68224800	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr8:68213800-68225000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr8:68213800-68225200	Weak transcription	Dnd41	blood
37	chr8:68213800-68225400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr8:68213800-68225400	Weak transcription	Placenta	Placenta
39	chr8:68213800-68225600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr8:68214000-68221400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr8:68214000-68222800	Weak transcription	HUVEC	blood vessel
42	chr8:68214000-68224600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr8:68214000-68225400	Weak transcription	Adipose Nuclei	Adipose
44	chr8:68214000-68225600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr8:68214000-68228200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr8:68214000-68234600	Weak transcription	HMEC	breast
47	chr8:68214200-68221400	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr8:68214400-68221000	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr8:68214400-68221200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr8:68214400-68225400	Weak transcription	Primary T helper cells fromperipheralblood	blood

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