Variant report

Variant	rs7819895
Chromosome Location	chr8:67943454-67943455
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:67828966..67835690-chr8:67939145..67944421,12	MCF-7	breast:
2	chr8:67941302..67942844-chr8:67943069..67945943,2	MCF-7	breast:
3	chr8:67942578..67944966-chr8:67951636..67954631,2	K562	blood:

Variant related genes	Relation type
ENSG00000254341	Chromatin interaction
ENSG00000245910	Chromatin interaction

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs10504399	0.82[EUR][1000 genomes]
rs1138476	1.00[CEU][hapmap]
rs11557200	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11985037	1.00[CEU][hapmap]
rs11986053	1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11986982	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11988465	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11989855	1.00[CEU][hapmap]
rs11990461	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes]
rs11992605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11992626	1.00[CEU][hapmap]
rs11997189	1.00[CEU][hapmap]
rs11997404	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12114202	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1466283	1.00[CEU][hapmap]
rs16919053	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16933071	1.00[CEU][hapmap]
rs16933079	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs16933080	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs16933092	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs16933094	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs16933097	1.00[CEU][hapmap]
rs16933106	1.00[JPT][hapmap];1.00[MEX][hapmap]
rs16933125	1.00[CEU][hapmap]
rs16933132	1.00[JPT][hapmap];1.00[MEX][hapmap]
rs16933138	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16933139	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16933147	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16933148	1.00[CEU][hapmap]
rs16933160	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16933162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16933170	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16933173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16933178	1.00[CEU][hapmap]
rs16933182	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs16933190	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs16933204	0.82[EUR][1000 genomes]
rs16933214	0.82[EUR][1000 genomes]
rs1808140	1.00[JPT][hapmap];1.00[MEX][hapmap]
rs2168542	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2290585	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs2290586	1.00[JPT][hapmap]
rs2305672	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2305673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28547325	0.82[AMR][1000 genomes]
rs3779995	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes]
rs3780131	0.87[EUR][1000 genomes]
rs4592015	1.00[JPT][hapmap]
rs55662680	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55737416	0.87[EUR][1000 genomes]
rs55745066	0.92[EUR][1000 genomes]
rs55865037	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55983978	0.87[EUR][1000 genomes]
rs55986624	0.82[EUR][1000 genomes]
rs56101466	0.87[EUR][1000 genomes]
rs56858183	0.82[EUR][1000 genomes]
rs57101332	0.87[EUR][1000 genomes]
rs57867847	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58448590	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58715460	0.82[EUR][1000 genomes]
rs59335949	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59634730	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60324950	0.87[EUR][1000 genomes]
rs60666237	0.85[AMR][1000 genomes]
rs60894518	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61085456	0.85[AMR][1000 genomes]
rs61193782	0.87[EUR][1000 genomes]
rs6472289	0.85[AMR][1000 genomes]
rs6982699	0.85[AMR][1000 genomes]
rs6984447	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes]
rs6984568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6984597	1.00[JPT][hapmap]
rs6984650	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6985273	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6987597	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6987624	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6988547	1.00[JPT][hapmap];1.00[MEX][hapmap]
rs6990298	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6991974	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs6998170	1.00[JPT][hapmap];1.00[MEX][hapmap]
rs6998290	1.00[JPT][hapmap];1.00[MEX][hapmap]
rs7000650	1.00[JPT][hapmap];1.00[MEX][hapmap]
rs7003018	1.00[JPT][hapmap]
rs7004549	1.00[CEU][hapmap]
rs7005014	1.00[JPT][hapmap];1.00[MEX][hapmap]
rs7008877	1.00[JPT][hapmap];1.00[MEX][hapmap]
rs7009678	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73691182	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73691185	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73691186	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73691192	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73691193	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73693124	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73693135	0.82[EUR][1000 genomes]
rs73693152	0.87[EUR][1000 genomes]
rs73693153	0.87[EUR][1000 genomes]
rs73693631	0.85[AMR][1000 genomes]
rs73693632	0.85[AMR][1000 genomes]
rs7461383	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7812425	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7812510	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7815142	0.85[AMR][1000 genomes]
rs7815863	0.82[AMR][1000 genomes]
rs7816827	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7819894	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7820403	0.85[AMR][1000 genomes]
rs7822754	0.82[EUR][1000 genomes]
rs7824775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7828748	1.00[JPT][hapmap]
rs7833373	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7833956	1.00[JPT][hapmap];1.00[MEX][hapmap]
rs7834516	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs7841884	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7842770	0.85[AMR][1000 genomes]
rs979679	1.00[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802652	chr8:67894007-67964309	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1016742	chr8:67917418-68125319	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv539639	chr8:67917418-68125319	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67941200-67953400	Weak transcription	Fetal Stomach	stomach
2	chr8:67941200-67953800	Weak transcription	Placenta	Placenta
3	chr8:67941200-67954400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr8:67941200-67954400	Weak transcription	Spleen	Spleen
5	chr8:67941200-67954600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr8:67941200-67954800	Weak transcription	NH-A	brain
7	chr8:67941200-67957400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:67941400-67953600	Weak transcription	Liver	Liver
9	chr8:67941400-67954600	Weak transcription	A549	lung
10	chr8:67941600-67952800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:67941600-67953800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr8:67941600-67954400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr8:67941600-67956000	Weak transcription	Brain Germinal Matrix	brain
14	chr8:67941600-67963000	Weak transcription	Fetal Heart	heart
15	chr8:67941800-67944000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr8:67941800-67953600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr8:67942000-67950000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr8:67942000-67954200	Weak transcription	Fetal Lung	lung
19	chr8:67942000-67954800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr8:67942200-67954400	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links