Variant report

Variant	rs16933106
Chromosome Location	chr8:67852825-67852826
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:67846820..67850015-chr8:67850754..67852857,4	K562	blood:
2	chr8:67852702..67855011-chr8:67858624..67860729,2	MCF-7	breast:
3	chr8:67851111..67853855-chr8:67939390..67942184,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178125	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11986053	1.00[JPT][hapmap]
rs11986982	1.00[JPT][hapmap]
rs11992605	1.00[JPT][hapmap]
rs11997404	1.00[JPT][hapmap]
rs16933132	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16933138	1.00[JPT][hapmap]
rs16933139	1.00[JPT][hapmap]
rs16933160	1.00[JPT][hapmap]
rs16933162	1.00[JPT][hapmap]
rs16933170	1.00[JPT][hapmap]
rs16933173	1.00[JPT][hapmap]
rs1808140	0.87[EUR][1000 genomes]
rs1864606	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2290586	0.87[EUR][1000 genomes]
rs2305673	1.00[JPT][hapmap]
rs28417755	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28720946	0.92[ASN][1000 genomes]
rs4592015	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6984568	1.00[JPT][hapmap]
rs6984597	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs6985273	0.81[GIH][hapmap]
rs6990298	1.00[JPT][hapmap]
rs6998170	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6998290	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7000650	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7003018	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7005014	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7008877	0.87[EUR][1000 genomes]
rs7009678	1.00[JPT][hapmap]
rs7018327	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7812859	0.87[EUR][1000 genomes]
rs7819894	1.00[JPT][hapmap]
rs7819895	1.00[JPT][hapmap];1.00[MEX][hapmap]
rs7820420	1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7824775	1.00[JPT][hapmap]
rs7828748	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs7833956	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7841884	1.00[JPT][hapmap]
rs9693185	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67838000-67855000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:67852600-67853200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:67852800-67858800	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links