Variant report
| Variant | rs9693185 |
|---|---|
| Chromosome Location | chr8:67867123-67867124 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000104218 | Chromatin interaction |
| ENSG00000121022 | Chromatin interaction |
| ENSG00000245910 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs16933106 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs16933132 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1808140 | 1.00[EUR][1000 genomes] |
| rs2290586 | 1.00[EUR][1000 genomes] |
| rs28417755 | 1.00[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs4072321 | 0.88[EUR][1000 genomes] |
| rs4592015 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6984597 | 1.00[EUR][1000 genomes] |
| rs6998170 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7000650 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7003018 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7005014 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7008877 | 1.00[EUR][1000 genomes] |
| rs7018327 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7812859 | 1.00[EUR][1000 genomes] |
| rs7820420 | 0.90[AMR][1000 genomes] |
| rs7828748 | 1.00[EUR][1000 genomes] |
| rs7833956 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3433426 | chr8:67859447-67876356 | Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:67867000-67867400 | Active TSS | ES-WA7 Cell Line | embryonic stem cell |
