Variant report

Variant	rs7820420
Chromosome Location	chr8:67767749-67767750
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11985572	1.00[JPT][hapmap]
rs11986831	1.00[CHB][hapmap]
rs11988213	1.00[CHB][hapmap]
rs11990461	1.00[JPT][hapmap]
rs11990636	1.00[JPT][hapmap]
rs11995256	1.00[JPT][hapmap]
rs11996861	1.00[JPT][hapmap]
rs11997967	1.00[JPT][hapmap]
rs11998194	1.00[CHB][hapmap]
rs11998301	1.00[JPT][hapmap]
rs12114734	1.00[JPT][hapmap]
rs16933013	1.00[CHB][hapmap]
rs16933026	1.00[CHB][hapmap]
rs16933032	1.00[CHB][hapmap]
rs16933034	1.00[JPT][hapmap]
rs16933039	1.00[JPT][hapmap]
rs16933057	1.00[JPT][hapmap]
rs16933060	1.00[JPT][hapmap]
rs16933079	1.00[JPT][hapmap]
rs16933080	1.00[JPT][hapmap]
rs16933092	1.00[JPT][hapmap]
rs16933094	1.00[JPT][hapmap]
rs16933106	1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16933132	1.00[CHB][hapmap];0.90[AMR][1000 genomes]
rs1864606	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2357998	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs28417755	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28720946	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35517376	1.00[JPT][hapmap]
rs3779995	1.00[JPT][hapmap]
rs3808602	1.00[CHB][hapmap]
rs3857962	1.00[JPT][hapmap]
rs3913346	1.00[JPT][hapmap]
rs3929419	1.00[JPT][hapmap]
rs4345540	1.00[CHB][hapmap]
rs4592015	1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56810217	0.81[ASN][1000 genomes]
rs59058682	0.80[EUR][1000 genomes]
rs61589642	0.86[EUR][1000 genomes]
rs6472285	1.00[JPT][hapmap]
rs6983632	1.00[JPT][hapmap]
rs6984447	1.00[JPT][hapmap]
rs6984650	1.00[JPT][hapmap]
rs6985273	1.00[JPT][hapmap]
rs6998170	0.90[AMR][1000 genomes]
rs6998252	1.00[JPT][hapmap]
rs6998290	1.00[CHB][hapmap]
rs6998505	1.00[CHB][hapmap]
rs6998777	1.00[JPT][hapmap]
rs7000650	1.00[CHB][hapmap];0.90[AMR][1000 genomes]
rs7002479	1.00[JPT][hapmap]
rs7003548	1.00[CHB][hapmap]
rs7005014	1.00[CHB][hapmap];0.90[AMR][1000 genomes]
rs7015619	1.00[JPT][hapmap]
rs7017471	1.00[JPT][hapmap]
rs73253964	0.86[EUR][1000 genomes]
rs7828748	1.00[CHB][hapmap]
rs7833956	0.90[AMR][1000 genomes]
rs7840192	1.00[CHB][hapmap]
rs9693185	0.90[AMR][1000 genomes]
rs979679	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026746	chr8:67639626-67794164	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67688000-67783000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:67689000-67782600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr8:67696800-67783000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:67707600-67772200	Weak transcription	Thymus	Thymus
5	chr8:67707600-67773000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:67707600-67777000	Weak transcription	Primary B cells from peripheral blood	blood
7	chr8:67707600-67783000	Weak transcription	Gastric	stomach
8	chr8:67711800-67782600	Weak transcription	HepG2	liver
9	chr8:67712200-67777200	Weak transcription	Esophagus	oesophagus
10	chr8:67723800-67768400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr8:67727000-67777200	Weak transcription	Pancreas	Pancrea
12	chr8:67727000-67782600	Weak transcription	Aorta	Aorta
13	chr8:67734200-67776000	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr8:67739800-67774200	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr8:67741800-67774200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr8:67741800-67774200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr8:67743400-67767800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr8:67743400-67772400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr8:67744600-67782800	Weak transcription	HSMM	muscle
20	chr8:67746600-67773000	Weak transcription	Small Intestine	intestine
21	chr8:67749800-67773000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr8:67753600-67777200	Weak transcription	Spleen	Spleen
23	chr8:67754800-67773200	Weak transcription	Fetal Thymus	thymus
24	chr8:67755200-67771400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr8:67755400-67774000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr8:67757000-67782400	Weak transcription	Colon Smooth Muscle	Colon
27	chr8:67757400-67782400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr8:67758000-67773400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr8:67758200-67770400	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr8:67758600-67773400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr8:67758600-67776000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr8:67758800-67772400	Strong transcription	Liver	Liver
33	chr8:67759000-67772800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr8:67759400-67769200	Weak transcription	Fetal Intestine Small	intestine
35	chr8:67760200-67771200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr8:67760600-67783000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr8:67760800-67782600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr8:67761000-67774800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr8:67761400-67767800	Weak transcription	Brain Substantia Nigra	brain
40	chr8:67761400-67782600	Weak transcription	Stomach Smooth Muscle	stomach
41	chr8:67761600-67778200	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr8:67761800-67775000	Weak transcription	Left Ventricle	heart
43	chr8:67762200-67776600	Weak transcription	Lung	lung
44	chr8:67762600-67771400	Strong transcription	Brain Anterior Caudate	brain
45	chr8:67762600-67772800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr8:67762800-67769400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr8:67762800-67771000	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr8:67763000-67769600	Weak transcription	Duodenum Mucosa	Duodenum
49	chr8:67763200-67782400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr8:67763400-67782600	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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