Variant report

Variant	rs16933026
Chromosome Location	chr8:67592249-67592250
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:67586722..67588670-chr8:67591536..67593627,2	K562	blood:
2	chr8:67592223..67597727-chr8:67621903..67626151,5	MCF-7	breast:
3	chr8:67585153..67588222-chr8:67592127..67596094,3	K562	blood:
4	chr8:67576102..67584643-chr8:67586059..67596736,15	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SGK3-1	chr8:67591774-67592259	NONHSAT127042
2	lnc-SGK3-1	chr8:67591956-67592259	NONHSAT127041

Variant related genes	Relation type
ENSG00000104205	Chromatin interaction
ENSG00000213865	Chromatin interaction
ENSG00000175073	Chromatin interaction
ENSG00000270024	Chromatin interaction

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10283103	1.00[CHB][hapmap]
rs10504393	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11985572	1.00[CEU][hapmap]
rs11986831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11987253	0.96[EUR][1000 genomes]
rs11987254	0.96[EUR][1000 genomes]
rs11987271	0.92[EUR][1000 genomes]
rs11987311	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11988213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11990322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11990331	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11990461	1.00[CEU][hapmap]
rs11990636	1.00[CEU][hapmap]
rs11992252	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11992295	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11993306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11993354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs11994827	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11995031	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11995256	1.00[CEU][hapmap]
rs11995291	0.81[EUR][1000 genomes]
rs11996861	1.00[CEU][hapmap]
rs11997260	1.00[CEU][hapmap]
rs11997554	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11997967	1.00[CEU][hapmap]
rs11998194	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11998301	1.00[CEU][hapmap]
rs12114734	1.00[CEU][hapmap]
rs12114868	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932983	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs16932985	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs16932996	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs16933013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933034	1.00[CEU][hapmap]
rs16933036	1.00[CEU][hapmap]
rs16933039	1.00[CEU][hapmap]
rs16933057	1.00[CEU][hapmap]
rs16933060	1.00[CEU][hapmap]
rs16933065	1.00[CEU][hapmap]
rs16933071	1.00[CEU][hapmap]
rs16933079	1.00[CEU][hapmap]
rs16933080	1.00[CEU][hapmap]
rs2357998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2358000	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[EUR][1000 genomes]
rs28432871	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs28572179	0.81[EUR][1000 genomes]
rs28589429	0.81[EUR][1000 genomes]
rs34301114	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35078037	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35353562	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35517376	1.00[CEU][hapmap]
rs3808602	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs3857962	1.00[CEU][hapmap]
rs3913346	1.00[CEU][hapmap]
rs3929419	1.00[CEU][hapmap]
rs4345540	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4534119	1.00[CEU][hapmap]
rs56682762	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56742359	0.81[EUR][1000 genomes]
rs56810217	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56911449	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57125106	0.92[EUR][1000 genomes]
rs57351080	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57858031	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58454063	0.81[EUR][1000 genomes]
rs58806068	0.81[EUR][1000 genomes]
rs59058682	1.00[ASN][1000 genomes]
rs59089124	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59410806	0.96[EUR][1000 genomes]
rs59643912	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60165103	0.80[AFR][1000 genomes]
rs60784079	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61469007	0.81[EUR][1000 genomes]
rs61589642	1.00[ASN][1000 genomes]
rs6472285	1.00[CEU][hapmap]
rs6982202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6982407	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983632	1.00[CEU][hapmap]
rs6984447	1.00[CEU][hapmap]
rs6985273	1.00[CEU][hapmap]
rs6986439	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6986940	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6987665	1.00[CEU][hapmap]
rs6988670	0.81[EUR][1000 genomes]
rs6991992	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6998252	1.00[CEU][hapmap]
rs6998505	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6998718	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6998777	1.00[CEU][hapmap]
rs7002479	1.00[CEU][hapmap]
rs7003548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7008740	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs7015619	1.00[CEU][hapmap]
rs7017471	1.00[CEU][hapmap]
rs73248113	0.81[EUR][1000 genomes]
rs73248122	0.81[EUR][1000 genomes]
rs73248134	0.81[EUR][1000 genomes]
rs73248138	0.81[EUR][1000 genomes]
rs73250233	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs73250238	0.96[EUR][1000 genomes]
rs73250241	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs73250244	0.96[EUR][1000 genomes]
rs73250249	0.96[EUR][1000 genomes]
rs73250250	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73250252	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73250262	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73251887	0.96[EUR][1000 genomes]
rs73253909	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73253915	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73253964	1.00[ASN][1000 genomes]
rs73253968	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73261704	0.81[EUR][1000 genomes]
rs73261763	0.81[EUR][1000 genomes]
rs73261767	0.81[EUR][1000 genomes]
rs7820420	1.00[CHB][hapmap]
rs7828492	0.81[EUR][1000 genomes]
rs7830436	0.81[EUR][1000 genomes]
rs7840192	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7844944	0.81[EUR][1000 genomes]
rs957655	1.00[CHB][hapmap]
rs979679	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv831346	chr8:67486555-67675324	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67580200-67601800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:67580400-67605000	Weak transcription	Stomach Mucosa	stomach
3	chr8:67580600-67624400	Weak transcription	Aorta	Aorta
4	chr8:67580600-67624400	Weak transcription	Ovary	ovary
5	chr8:67580800-67594200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr8:67580800-67594800	Weak transcription	Pancreas	Pancrea
7	chr8:67580800-67602200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr8:67580800-67603600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr8:67580800-67604000	Weak transcription	Gastric	stomach
10	chr8:67580800-67609200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr8:67580800-67609200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr8:67580800-67623600	Weak transcription	Colonic Mucosa	Colon
13	chr8:67581000-67624600	Weak transcription	Spleen	Spleen
14	chr8:67581200-67594800	Weak transcription	Fetal Kidney	kidney
15	chr8:67581200-67601800	Weak transcription	Brain Substantia Nigra	brain
16	chr8:67581200-67601800	Weak transcription	HSMMtube	muscle
17	chr8:67581400-67595400	Weak transcription	Esophagus	oesophagus
18	chr8:67581400-67601800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr8:67581400-67602000	Weak transcription	Lung	lung
20	chr8:67581400-67604200	Weak transcription	Right Ventricle	heart
21	chr8:67581600-67624000	Weak transcription	Fetal Brain Male	brain
22	chr8:67582400-67614200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr8:67582600-67594800	Weak transcription	HepG2	liver
24	chr8:67582800-67597400	Weak transcription	Fetal Lung	lung
25	chr8:67584800-67597400	Weak transcription	Psoas Muscle	Psoas
26	chr8:67584800-67602200	Weak transcription	Brain Angular Gyrus	brain
27	chr8:67585000-67594800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr8:67587200-67594800	Weak transcription	Brain Hippocampus Middle	brain
29	chr8:67587400-67596000	Weak transcription	Small Intestine	intestine
30	chr8:67587400-67602200	Weak transcription	Colon Smooth Muscle	Colon
31	chr8:67587600-67609000	Weak transcription	A549	lung
32	chr8:67587600-67614200	Weak transcription	Fetal Heart	heart
33	chr8:67587800-67602200	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr8:67588200-67592800	Strong transcription	Fetal Thymus	thymus
35	chr8:67588200-67593000	Strong transcription	Dnd41	blood
36	chr8:67588400-67597000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr8:67588400-67598400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr8:67588400-67607600	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr8:67588600-67592800	Strong transcription	Primary B cells from cord blood	blood
40	chr8:67588600-67592800	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr8:67588600-67593200	Strong transcription	Primary T cells from cord blood	blood
42	chr8:67588600-67595400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr8:67589000-67595600	Strong transcription	Fetal Muscle Trunk	muscle
44	chr8:67589400-67597000	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr8:67589800-67592800	Weak transcription	Primary hematopoietic stem cells	blood
46	chr8:67590000-67594400	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr8:67590000-67604800	Weak transcription	Brain Anterior Caudate	brain
48	chr8:67590200-67592400	Weak transcription	Stomach Smooth Muscle	stomach
49	chr8:67590200-67592800	Weak transcription	Fetal Intestine Large	intestine
50	chr8:67590200-67592800	Weak transcription	Fetal Intestine Small	intestine

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