Variant report

Variant	rs73250241
Chromosome Location	chr8:67524464-67524465
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:67524115..67526215-chr8:67685855..67687886,2	K562	blood:
2	chr8:67523268..67525543-chr8:67973888..67976833,2	MCF-7	breast:
3	chr8:67521707..67525650-chr8:67623825..67627698,8	MCF-7	breast:
4	chr8:67523974..67528801-chr8:67579151..67581998,7	K562	blood:
5	chr8:67370918..67373659-chr8:67521993..67524621,2	MCF-7	breast:
6	chr8:67341571..67344891-chr8:67522913..67526545,3	MCF-7	breast:
7	chr8:67371423..67376205-chr8:67520601..67527002,8	MCF-7	breast:
8	chr8:67523934..67528477-chr8:67576797..67579768,6	MCF-7	breast:
9	chr8:67524099..67528801-chr8:67579151..67581449,5	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MYBL1-2	chr8:67524380-67526482	NONHSAT127036

No data

Variant related genes	Relation type
ENSG00000104218	Chromatin interaction
ENSG00000270024	Chromatin interaction
ENSG00000121022	Chromatin interaction
ENSG00000104205	Chromatin interaction
ENSG00000213865	Chromatin interaction
ENSG00000147576	Chromatin interaction
ENSG00000169085	Chromatin interaction
ENSG00000175073	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10504393	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11986831	1.00[EUR][1000 genomes]
rs11987253	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11987254	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11987271	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11987311	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11988213	1.00[EUR][1000 genomes]
rs11990322	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11990331	0.95[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11992252	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11992295	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11993306	1.00[ASN][1000 genomes]
rs11993354	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11994827	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11995031	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11995253	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11995291	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11997554	1.00[EUR][1000 genomes]
rs11998194	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12114868	0.96[EUR][1000 genomes]
rs16932983	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932985	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932996	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933013	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16933026	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs16933032	1.00[EUR][1000 genomes]
rs2357998	1.00[EUR][1000 genomes]
rs2358000	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28432871	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28572179	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28589429	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34301114	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35078037	1.00[EUR][1000 genomes]
rs35353562	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3808602	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3824258	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4345540	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56682762	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56742359	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56810217	1.00[EUR][1000 genomes]
rs56911449	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs57125106	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57351080	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57858031	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58454063	0.92[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58806068	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59089124	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59410806	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59643912	1.00[EUR][1000 genomes]
rs60165103	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60655524	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60784079	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61469007	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982202	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982407	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6986439	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6986940	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988670	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6991992	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6998505	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6998718	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7003548	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7008740	0.92[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73248113	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73248122	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73248134	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73248138	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73250233	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73250238	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73250244	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73250249	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73250250	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73250252	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73250262	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73251887	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73253909	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73253915	1.00[EUR][1000 genomes]
rs73253968	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73261704	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73261763	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73261767	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7828492	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7830436	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7840192	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7844944	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv831346	chr8:67486555-67675324	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67511400-67524600	Weak transcription	Right Atrium	heart
2	chr8:67521200-67524600	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
3	chr8:67521400-67524600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr8:67521800-67524600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:67521800-67524600	Active TSS	Primary T cells fromperipheralblood	blood
6	chr8:67522200-67526200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr8:67522200-67526400	Active TSS	Primary T helper naive cells from peripheral blood	blood
8	chr8:67522600-67527000	Active TSS	NHLF	lung
9	chr8:67522800-67526400	Active TSS	Primary T killer memory cells from peripheral blood	blood
10	chr8:67523200-67526400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:67523200-67526600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:67523200-67526600	Active TSS	HSMM	muscle
13	chr8:67523400-67526400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr8:67523600-67524600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr8:67523600-67524600	Flanking Active TSS	Osteobl	bone
16	chr8:67523600-67524800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
17	chr8:67523600-67525000	Flanking Active TSS	Dnd41	blood
18	chr8:67523600-67525200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr8:67523600-67525200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
20	chr8:67523600-67526200	Active TSS	NH-A	brain
21	chr8:67523600-67526800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr8:67523800-67524600	Flanking Active TSS	Fetal Heart	heart
23	chr8:67523800-67524800	Flanking Active TSS	NHEK	skin
24	chr8:67523800-67525000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr8:67523800-67525000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr8:67523800-67526200	Active TSS	Brain Germinal Matrix	brain
27	chr8:67523800-67527000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr8:67524000-67524600	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr8:67524000-67524800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
30	chr8:67524000-67524800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
31	chr8:67524000-67524800	Flanking Active TSS	Hela-S3	cervix
32	chr8:67524000-67525000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
33	chr8:67524000-67526200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
34	chr8:67524000-67526400	Active TSS	HMEC	breast
35	chr8:67524000-67526800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr8:67524200-67524600	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr8:67524200-67524600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
38	chr8:67524200-67524600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
39	chr8:67524200-67524600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
40	chr8:67524200-67524600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr8:67524200-67524600	Enhancers	Brain Angular Gyrus	brain
42	chr8:67524200-67524600	Enhancers	Brain Anterior Caudate	brain
43	chr8:67524200-67524600	Active TSS	Right Ventricle	heart
44	chr8:67524200-67524600	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
45	chr8:67524200-67524800	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
46	chr8:67524200-67524800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr8:67524200-67524800	Active TSS	Rectal Smooth Muscle	rectum
48	chr8:67524200-67524800	Active TSS	Thymus	Thymus
49	chr8:67524200-67525000	Flanking Bivalent TSS/Enh	Fetal Lung	lung
50	chr8:67524200-67525000	Flanking Active TSS	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links