Variant report

Variant	rs57351080
Chromosome Location	chr8:67612701-67612702
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67602104..67604206-chr8:67612057..67614964,2	MCF-7	breast:
2	chr8:67611856..67613738-chr8:67622198..67624981,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104205	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10504393	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11986831	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11987253	1.00[EUR][1000 genomes]
rs11987254	1.00[EUR][1000 genomes]
rs11987271	0.96[EUR][1000 genomes]
rs11987311	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11988213	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11990322	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11990331	0.85[EUR][1000 genomes]
rs11992252	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11992295	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11993354	1.00[EUR][1000 genomes]
rs11994827	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11995031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11995253	0.81[EUR][1000 genomes]
rs11995291	0.85[EUR][1000 genomes]
rs11997554	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11998194	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12114868	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932983	0.85[EUR][1000 genomes]
rs16932985	0.85[EUR][1000 genomes]
rs16932996	1.00[EUR][1000 genomes]
rs16933013	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933026	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933032	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2357998	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2358000	0.85[EUR][1000 genomes]
rs28432871	0.85[EUR][1000 genomes]
rs28572179	0.85[EUR][1000 genomes]
rs28589429	0.85[EUR][1000 genomes]
rs34301114	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35078037	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35353562	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3808602	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824258	0.96[EUR][1000 genomes]
rs4345540	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56682762	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56742359	0.85[EUR][1000 genomes]
rs56810217	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56911449	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57125106	0.96[EUR][1000 genomes]
rs57858031	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58454063	0.85[EUR][1000 genomes]
rs58806068	0.85[EUR][1000 genomes]
rs59058682	1.00[ASN][1000 genomes]
rs59089124	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59410806	1.00[EUR][1000 genomes]
rs59643912	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60165103	0.81[EUR][1000 genomes]
rs60655524	0.80[EUR][1000 genomes]
rs60784079	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61469007	0.85[EUR][1000 genomes]
rs61589642	1.00[ASN][1000 genomes]
rs6982202	1.00[EUR][1000 genomes]
rs6982407	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6986439	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6986940	1.00[EUR][1000 genomes]
rs6988670	0.85[EUR][1000 genomes]
rs6991992	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6998505	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6998718	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7003548	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7008740	0.85[EUR][1000 genomes]
rs73248113	0.85[EUR][1000 genomes]
rs73248122	0.85[EUR][1000 genomes]
rs73248134	0.85[EUR][1000 genomes]
rs73248138	0.85[EUR][1000 genomes]
rs73250233	1.00[EUR][1000 genomes]
rs73250238	1.00[EUR][1000 genomes]
rs73250241	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73250244	1.00[EUR][1000 genomes]
rs73250249	1.00[EUR][1000 genomes]
rs73250250	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73250252	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73250262	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73251887	1.00[EUR][1000 genomes]
rs73253909	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73253915	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73253964	1.00[ASN][1000 genomes]
rs73253968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73261704	0.85[EUR][1000 genomes]
rs73261763	0.85[EUR][1000 genomes]
rs73261767	0.85[EUR][1000 genomes]
rs7828492	0.85[EUR][1000 genomes]
rs7830436	0.85[EUR][1000 genomes]
rs7840192	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7844944	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv831346	chr8:67486555-67675324	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv3439706	chr8:67611798-67614296	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67580600-67624400	Weak transcription	Aorta	Aorta
2	chr8:67580600-67624400	Weak transcription	Ovary	ovary
3	chr8:67580800-67623600	Weak transcription	Colonic Mucosa	Colon
4	chr8:67581000-67624600	Weak transcription	Spleen	Spleen
5	chr8:67581600-67624000	Weak transcription	Fetal Brain Male	brain
6	chr8:67582400-67614200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:67587600-67614200	Weak transcription	Fetal Heart	heart
8	chr8:67598800-67614200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr8:67602400-67614200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr8:67602800-67623800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr8:67602800-67624000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr8:67603000-67615200	Weak transcription	Fetal Lung	lung
13	chr8:67603000-67623800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr8:67603200-67614200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr8:67603200-67617800	Weak transcription	GM12878-XiMat	blood
16	chr8:67603200-67623200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr8:67603200-67624600	Weak transcription	Lung	lung
18	chr8:67603400-67613400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr8:67603400-67619600	Weak transcription	Brain Angular Gyrus	brain
20	chr8:67603400-67623000	Weak transcription	Primary hematopoietic stem cells	blood
21	chr8:67603400-67624200	Weak transcription	Fetal Brain Female	brain
22	chr8:67603400-67624400	Weak transcription	Placenta	Placenta
23	chr8:67604400-67623600	Weak transcription	Brain Hippocampus Middle	brain
24	chr8:67604400-67623800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr8:67604400-67624200	Weak transcription	HSMMtube	muscle
26	chr8:67604400-67624400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr8:67604600-67624400	Weak transcription	Fetal Thymus	thymus
28	chr8:67604800-67616200	Weak transcription	Adipose Nuclei	Adipose
29	chr8:67604800-67616600	Weak transcription	Liver	Liver
30	chr8:67604800-67623600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr8:67605200-67623400	Weak transcription	Primary B cells from cord blood	blood
32	chr8:67605200-67623800	Weak transcription	Brain Anterior Caudate	brain
33	chr8:67605200-67624000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr8:67605400-67615000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr8:67605600-67616600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr8:67605600-67623200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr8:67605600-67624200	Weak transcription	Primary T cells from cord blood	blood
38	chr8:67605600-67624400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr8:67605800-67617400	Weak transcription	Fetal Muscle Trunk	muscle
40	chr8:67606200-67624200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr8:67606200-67624200	Weak transcription	Brain Germinal Matrix	brain
42	chr8:67606400-67623400	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr8:67606400-67623800	Weak transcription	Fetal Intestine Small	intestine
44	chr8:67606400-67624400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr8:67607600-67623200	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr8:67607600-67623600	Weak transcription	Fetal Intestine Large	intestine
47	chr8:67608000-67624000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr8:67611200-67624000	Weak transcription	Fetal Stomach	stomach

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