Variant report

Variant	rs73261763
Chromosome Location	chr8:67478898-67478899
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10504393	0.85[EUR][1000 genomes]
rs11986831	0.85[EUR][1000 genomes]
rs11987253	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11987254	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11987271	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11987311	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11988213	0.85[EUR][1000 genomes]
rs11990322	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11990331	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11992252	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11992295	0.85[EUR][1000 genomes]
rs11993306	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11993354	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11994827	0.85[EUR][1000 genomes]
rs11995031	0.85[EUR][1000 genomes]
rs11995253	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11995291	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11997554	0.85[EUR][1000 genomes]
rs11998194	0.85[EUR][1000 genomes]
rs12114868	0.81[EUR][1000 genomes]
rs16932983	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932985	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932996	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933013	0.85[EUR][1000 genomes]
rs16933026	0.81[EUR][1000 genomes]
rs16933032	0.85[EUR][1000 genomes]
rs2357998	0.85[EUR][1000 genomes]
rs2358000	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28432871	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28572179	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28589429	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34301114	0.85[EUR][1000 genomes]
rs35078037	0.85[EUR][1000 genomes]
rs35353562	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3808602	0.85[EUR][1000 genomes]
rs3824258	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4345540	0.85[EUR][1000 genomes]
rs56682762	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56742359	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56810217	0.85[EUR][1000 genomes]
rs56911449	0.81[EUR][1000 genomes]
rs57125106	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57351080	0.85[EUR][1000 genomes]
rs57858031	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58454063	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58806068	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59089124	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59410806	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59643912	0.85[EUR][1000 genomes]
rs60165103	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60655524	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60784079	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61469007	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982202	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982407	0.85[EUR][1000 genomes]
rs6986439	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6986940	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988670	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6991992	0.85[EUR][1000 genomes]
rs6998505	0.88[EUR][1000 genomes]
rs6998718	0.85[EUR][1000 genomes]
rs7003548	0.85[EUR][1000 genomes]
rs7008740	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73248113	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73248122	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73248134	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73248138	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73250233	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73250238	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73250241	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73250244	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73250249	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73250250	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73250252	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73250262	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73251887	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73253909	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73253915	0.85[EUR][1000 genomes]
rs73253968	0.85[EUR][1000 genomes]
rs73261704	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73261767	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7828492	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7830436	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7840192	0.85[EUR][1000 genomes]
rs7844944	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67463600-67488200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr8:67464000-67493600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr8:67464600-67488200	Weak transcription	Dnd41	blood
4	chr8:67466600-67484000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:67468600-67480400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr8:67468600-67480800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr8:67468600-67493400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr8:67469600-67487400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr8:67470800-67481200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr8:67473000-67481400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr8:67473200-67481600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr8:67473400-67519600	Weak transcription	HMEC	breast
13	chr8:67473600-67487400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr8:67473600-67497800	Weak transcription	Left Ventricle	heart
15	chr8:67474200-67481200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr8:67474200-67483800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr8:67474200-67494000	Weak transcription	HUVEC	blood vessel
18	chr8:67474200-67521000	Weak transcription	NHEK	skin
19	chr8:67474200-67523000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr8:67474400-67479800	Strong transcription	HSMM	muscle
21	chr8:67474400-67490200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr8:67474600-67511200	Weak transcription	A549	lung
23	chr8:67474600-67520000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr8:67474800-67523200	Weak transcription	NH-A	brain
25	chr8:67475600-67486600	Weak transcription	Aorta	Aorta
26	chr8:67475600-67487800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr8:67477000-67479000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr8:67477200-67479600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr8:67477800-67487800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr8:67478000-67481400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr8:67478000-67489600	Weak transcription	Fetal Lung	lung
32	chr8:67478200-67484800	Weak transcription	Osteobl	bone
33	chr8:67478400-67482800	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr8:67478600-67479200	Strong transcription	NHDF-Ad	bronchial
35	chr8:67478800-67487600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr8:67478800-67487800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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