Variant report

Variant	rs6991992
Chromosome Location	chr8:67604630-67604631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67600642..67606358-chr8:67622899..67628495,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104205	Chromatin interaction

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10504393	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11986831	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11987253	1.00[EUR][1000 genomes]
rs11987254	1.00[EUR][1000 genomes]
rs11987271	0.96[EUR][1000 genomes]
rs11987311	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11988213	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11990322	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11990331	0.85[EUR][1000 genomes]
rs11992252	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11992295	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11993354	1.00[EUR][1000 genomes]
rs11994827	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11995031	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11995253	0.81[EUR][1000 genomes]
rs11995291	0.85[EUR][1000 genomes]
rs11997554	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11998194	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12114868	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932983	0.85[EUR][1000 genomes]
rs16932985	0.85[EUR][1000 genomes]
rs16932996	1.00[EUR][1000 genomes]
rs16933013	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933026	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933032	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2357998	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2358000	0.85[EUR][1000 genomes]
rs28432871	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs28572179	0.85[EUR][1000 genomes]
rs28589429	0.85[EUR][1000 genomes]
rs34301114	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35078037	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35353562	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3808602	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824258	0.96[EUR][1000 genomes]
rs4345540	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56682762	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56742359	0.85[EUR][1000 genomes]
rs56810217	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56911449	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57125106	0.96[EUR][1000 genomes]
rs57351080	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57858031	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58454063	0.85[EUR][1000 genomes]
rs58806068	0.85[EUR][1000 genomes]
rs59058682	1.00[ASN][1000 genomes]
rs59089124	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59410806	1.00[EUR][1000 genomes]
rs59643912	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60165103	0.81[EUR][1000 genomes]
rs60655524	0.80[EUR][1000 genomes]
rs60784079	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61469007	0.85[EUR][1000 genomes]
rs61589642	1.00[ASN][1000 genomes]
rs6982202	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6982407	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6986439	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6986940	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6988670	0.85[EUR][1000 genomes]
rs6998505	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6998718	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7003548	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7008740	0.85[EUR][1000 genomes]
rs73248113	0.85[EUR][1000 genomes]
rs73248122	0.85[EUR][1000 genomes]
rs73248134	0.85[EUR][1000 genomes]
rs73248138	0.85[EUR][1000 genomes]
rs73250233	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73250238	1.00[EUR][1000 genomes]
rs73250241	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73250244	1.00[EUR][1000 genomes]
rs73250249	1.00[EUR][1000 genomes]
rs73250250	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73250252	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73250262	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73251887	1.00[EUR][1000 genomes]
rs73253909	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73253915	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73253964	1.00[ASN][1000 genomes]
rs73253968	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73261704	0.85[EUR][1000 genomes]
rs73261763	0.85[EUR][1000 genomes]
rs73261767	0.85[EUR][1000 genomes]
rs7828492	0.85[EUR][1000 genomes]
rs7830436	0.85[EUR][1000 genomes]
rs7840192	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7844944	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv831346	chr8:67486555-67675324	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67580400-67605000	Weak transcription	Stomach Mucosa	stomach
2	chr8:67580600-67624400	Weak transcription	Aorta	Aorta
3	chr8:67580600-67624400	Weak transcription	Ovary	ovary
4	chr8:67580800-67609200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:67580800-67609200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr8:67580800-67623600	Weak transcription	Colonic Mucosa	Colon
7	chr8:67581000-67624600	Weak transcription	Spleen	Spleen
8	chr8:67581600-67624000	Weak transcription	Fetal Brain Male	brain
9	chr8:67582400-67614200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr8:67587600-67609000	Weak transcription	A549	lung
11	chr8:67587600-67614200	Weak transcription	Fetal Heart	heart
12	chr8:67588400-67607600	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr8:67590000-67604800	Weak transcription	Brain Anterior Caudate	brain
14	chr8:67593000-67609200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr8:67595400-67608600	Weak transcription	HepG2	liver
16	chr8:67598000-67605200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr8:67598800-67614200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr8:67599800-67605600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr8:67600400-67605400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr8:67600600-67604800	Strong transcription	Liver	Liver
21	chr8:67601200-67606400	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr8:67601600-67605600	Strong transcription	Primary T cells from cord blood	blood
23	chr8:67601800-67605200	Strong transcription	Primary B cells from cord blood	blood
24	chr8:67601800-67605600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr8:67601800-67606200	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr8:67601800-67606200	Strong transcription	Brain Germinal Matrix	brain
27	chr8:67601800-67606400	Strong transcription	Fetal Stomach	stomach
28	chr8:67602000-67605200	Strong transcription	Stomach Smooth Muscle	stomach
29	chr8:67602000-67605800	Strong transcription	Fetal Muscle Trunk	muscle
30	chr8:67602000-67606400	Strong transcription	Fetal Intestine Small	intestine
31	chr8:67602200-67604800	Strong transcription	Adipose Nuclei	Adipose
32	chr8:67602200-67605000	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr8:67602200-67605000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr8:67602200-67605200	Strong transcription	Skeletal Muscle Female	skeletal muscle
35	chr8:67602200-67607000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr8:67602400-67605200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr8:67602400-67614200	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr8:67602800-67606000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr8:67602800-67609000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr8:67602800-67609600	Weak transcription	HSMM	muscle
41	chr8:67602800-67623800	Weak transcription	Rectal Smooth Muscle	rectum
42	chr8:67602800-67624000	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr8:67603000-67604800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr8:67603000-67606600	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr8:67603000-67607000	Weak transcription	Left Ventricle	heart
46	chr8:67603000-67607600	Weak transcription	Thymus	Thymus
47	chr8:67603000-67607800	Weak transcription	Fetal Muscle Leg	muscle
48	chr8:67603000-67609600	Weak transcription	Colon Smooth Muscle	Colon
49	chr8:67603000-67611200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr8:67603000-67612000	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links