Variant report

Variant	rs16933036
Chromosome Location	chr8:67649681-67649682
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67628506..67631471-chr8:67648330..67649946,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SGK3-1	chr8:67649461-67649901	NONHSAT127044

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10504393	1.00[CEU][hapmap]
rs11985572	1.00[CEU][hapmap]
rs11986831	1.00[CEU][hapmap]
rs11987311	1.00[CEU][hapmap]
rs11988213	1.00[CEU][hapmap]
rs11990322	1.00[CEU][hapmap]
rs11990331	1.00[CEU][hapmap]
rs11990461	1.00[CEU][hapmap]
rs11990636	1.00[CEU][hapmap]
rs11992252	1.00[CEU][hapmap]
rs11993306	1.00[CEU][hapmap]
rs11993354	1.00[CEU][hapmap]
rs11995256	1.00[CEU][hapmap]
rs11996861	1.00[CEU][hapmap]
rs11997260	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11997967	1.00[CEU][hapmap]
rs11998194	1.00[CEU][hapmap]
rs11998301	1.00[CEU][hapmap]
rs12114734	1.00[CEU][hapmap]
rs16932983	1.00[CEU][hapmap]
rs16932985	1.00[CEU][hapmap]
rs16932996	1.00[CEU][hapmap]
rs16933013	1.00[CEU][hapmap]
rs16933026	1.00[CEU][hapmap]
rs16933032	1.00[CEU][hapmap]
rs16933034	1.00[CEU][hapmap]
rs16933039	1.00[CEU][hapmap]
rs16933043	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[LWK][hapmap];0.86[MKK][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16933057	1.00[CEU][hapmap]
rs16933060	1.00[CEU][hapmap]
rs16933065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.96[EUR][1000 genomes]
rs16933071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[EUR][1000 genomes]
rs16933079	1.00[CEU][hapmap]
rs16933080	1.00[CEU][hapmap]
rs16933092	1.00[CEU][hapmap]
rs16933094	1.00[CEU][hapmap]
rs16933097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs2357998	1.00[CEU][hapmap]
rs2358000	1.00[CEU][hapmap]
rs35517376	1.00[CEU][hapmap]
rs3779995	1.00[CEU][hapmap]
rs3808602	1.00[CEU][hapmap]
rs3824258	1.00[CEU][hapmap]
rs3857962	1.00[CEU][hapmap]
rs3913346	1.00[CEU][hapmap]
rs3929419	1.00[CEU][hapmap]
rs4345540	1.00[CEU][hapmap]
rs4534119	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs55784133	1.00[ASN][1000 genomes]
rs56100064	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56717011	0.81[EUR][1000 genomes]
rs58416462	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58787759	1.00[ASN][1000 genomes]
rs60624770	1.00[ASN][1000 genomes]
rs60964596	1.00[ASN][1000 genomes]
rs61167401	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472285	1.00[CEU][hapmap]
rs6982202	1.00[CEU][hapmap]
rs6983632	1.00[CEU][hapmap]
rs6984447	1.00[CEU][hapmap]
rs6984650	1.00[CEU][hapmap]
rs6985273	1.00[CEU][hapmap]
rs6986940	1.00[CEU][hapmap]
rs6987665	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6998252	1.00[CEU][hapmap]
rs6998505	1.00[CEU][hapmap]
rs6998777	1.00[CEU][hapmap]
rs7002479	1.00[CEU][hapmap]
rs7003548	1.00[CEU][hapmap]
rs7008740	1.00[CEU][hapmap]
rs7015619	1.00[CEU][hapmap]
rs7017471	1.00[CEU][hapmap]
rs73691159	1.00[ASN][1000 genomes]
rs73691161	1.00[ASN][1000 genomes]
rs73691597	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7840192	1.00[CEU][hapmap]
rs979679	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv831346	chr8:67486555-67675324	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1026746	chr8:67639626-67794164	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67625800-67650600	Weak transcription	Aorta	Aorta
2	chr8:67626200-67651200	Weak transcription	Right Ventricle	heart
3	chr8:67626200-67657600	Weak transcription	Lung	lung
4	chr8:67626200-67664400	Weak transcription	Ovary	ovary
5	chr8:67626200-67665200	Weak transcription	Fetal Stomach	stomach
6	chr8:67626800-67660600	Weak transcription	HSMMtube	muscle
7	chr8:67627200-67650400	Weak transcription	Adipose Nuclei	Adipose
8	chr8:67627200-67660200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:67627200-67665600	Weak transcription	Left Ventricle	heart
10	chr8:67628800-67651200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr8:67629000-67650600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr8:67632600-67650600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr8:67632600-67662400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr8:67633600-67659600	Weak transcription	Stomach Smooth Muscle	stomach
15	chr8:67638600-67650200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr8:67638600-67659800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr8:67638600-67660800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr8:67639000-67659600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr8:67639600-67664400	Weak transcription	Thymus	Thymus
20	chr8:67639800-67653400	Weak transcription	Colonic Mucosa	Colon
21	chr8:67641000-67659800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr8:67641200-67649800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr8:67641200-67650200	Weak transcription	Liver	Liver
24	chr8:67641200-67666200	Weak transcription	Pancreas	Pancrea
25	chr8:67642600-67650000	Weak transcription	Primary hematopoietic stem cells	blood
26	chr8:67643000-67652800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr8:67646400-67656000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr8:67646600-67660200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr8:67646800-67659800	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr8:67647800-67650200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr8:67647800-67671000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr8:67648000-67651000	Weak transcription	Brain Hippocampus Middle	brain
33	chr8:67648000-67651200	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr8:67648000-67659800	Weak transcription	Colon Smooth Muscle	Colon
35	chr8:67648400-67650600	Weak transcription	Brain Substantia Nigra	brain
36	chr8:67648400-67650800	Weak transcription	HSMM	muscle
37	chr8:67648400-67659400	Weak transcription	Brain Cingulate Gyrus	brain
38	chr8:67648400-67659600	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr8:67648400-67660200	Weak transcription	Brain Angular Gyrus	brain
40	chr8:67649000-67649800	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr8:67649200-67650200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr8:67649400-67650800	Genic enhancers	Fetal Intestine Small	intestine
43	chr8:67649600-67650400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr8:67649600-67650600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr8:67649600-67650600	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr8:67649600-67651200	Enhancers	Fetal Intestine Large	intestine

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