Variant report

Variant	rs16933043
Chromosome Location	chr8:67652803-67652804
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67651187..67654162-chr8:67972417..67974682,2	K562	blood:
2	chr8:67623919..67626514-chr8:67650327..67652837,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000121022	Chromatin interaction
ENSG00000104205	Chromatin interaction
ENSG00000104218	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11997260	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs16933036	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[LWK][hapmap];0.86[MKK][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16933065	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs16933071	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs16933097	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs28377622	1.00[ASN][1000 genomes]
rs4534119	1.00[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55784133	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56041142	0.95[EUR][1000 genomes]
rs56100064	0.86[ASN][1000 genomes]
rs58416462	1.00[ASN][1000 genomes]
rs58787759	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60624770	1.00[ASN][1000 genomes]
rs60964596	1.00[ASN][1000 genomes]
rs61167401	1.00[ASN][1000 genomes]
rs6987665	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[LWK][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691159	1.00[ASN][1000 genomes]
rs73691161	1.00[ASN][1000 genomes]
rs73691597	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv831346	chr8:67486555-67675324	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1026746	chr8:67639626-67794164	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16933043	TRIM55	cis	lymphoblastoid	seeQTL

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67626200-67657600	Weak transcription	Lung	lung
2	chr8:67626200-67664400	Weak transcription	Ovary	ovary
3	chr8:67626200-67665200	Weak transcription	Fetal Stomach	stomach
4	chr8:67626800-67660600	Weak transcription	HSMMtube	muscle
5	chr8:67627200-67660200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:67627200-67665600	Weak transcription	Left Ventricle	heart
7	chr8:67632600-67662400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr8:67633600-67659600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr8:67638600-67659800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:67638600-67660800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr8:67639000-67659600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:67639600-67664400	Weak transcription	Thymus	Thymus
13	chr8:67639800-67653400	Weak transcription	Colonic Mucosa	Colon
14	chr8:67641000-67659800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr8:67641200-67666200	Weak transcription	Pancreas	Pancrea
16	chr8:67646400-67656000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr8:67646600-67660200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr8:67646800-67659800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr8:67647800-67671000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr8:67648000-67659800	Weak transcription	Colon Smooth Muscle	Colon
21	chr8:67648400-67659400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr8:67648400-67659600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr8:67648400-67660200	Weak transcription	Brain Angular Gyrus	brain
24	chr8:67650400-67656000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr8:67650800-67660600	Weak transcription	Brain Substantia Nigra	brain
26	chr8:67651200-67653400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr8:67651400-67658600	Weak transcription	Brain Hippocampus Middle	brain
28	chr8:67651400-67663000	Weak transcription	Adipose Nuclei	Adipose
29	chr8:67651600-67654800	Weak transcription	Primary hematopoietic stem cells	blood
30	chr8:67651600-67664200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr8:67651800-67658000	Weak transcription	Liver	Liver
32	chr8:67651800-67659800	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr8:67652200-67654600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr8:67652200-67672400	Weak transcription	Fetal Intestine Small	intestine
35	chr8:67652400-67653000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr8:67652400-67654600	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr8:67652400-67654800	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr8:67652400-67664200	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr8:67652600-67654000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr8:67652600-67654000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr8:67652600-67660000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr8:67652600-67664000	Weak transcription	Primary B cells from cord blood	blood
43	chr8:67652800-67653000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr8:67652800-67654000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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