Variant report

Variant	rs73691159
Chromosome Location	chr8:67875515-67875516
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr8:67875312-67875731	GM12878	blood:	n/a	chr8:67875552-67875567
2	RUNX3	chr8:67875328-67875732	GM12878	blood:	n/a	chr8:67875552-67875567
3	ELF1	chr8:67875170-67875659	GM12878	blood:	n/a	n/a
4	E2F6	chr8:67873280-67875543	H1-hESC	embryonic stem cell:	n/a	chr8:67874005-67874017 chr8:67874881-67874891 chr8:67875365-67875375
5	SIN3A	chr8:67874052-67875570	H1-hESC	embryonic stem cell:	n/a	n/a
6	CHD1	chr8:67875485-67875614	H1-hESC	embryonic stem cell:	n/a	n/a
7	SUZ12	chr8:67873260-67875843	NT2-D1	testis:	n/a	n/a

Variant related genes	Relation type
TCF24	TF binding region

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1138476	0.91[EUR][1000 genomes]
rs11985037	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11988175	0.91[EUR][1000 genomes]
rs11989855	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11990088	0.91[EUR][1000 genomes]
rs11992626	0.91[EUR][1000 genomes]
rs11997189	0.91[EUR][1000 genomes]
rs11997260	1.00[ASN][1000 genomes]
rs1466283	0.83[EUR][1000 genomes]
rs16933036	1.00[ASN][1000 genomes]
rs16933043	1.00[ASN][1000 genomes]
rs16933148	0.91[EUR][1000 genomes]
rs16933178	0.91[EUR][1000 genomes]
rs28377622	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4534119	1.00[ASN][1000 genomes]
rs55783506	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55784133	1.00[ASN][1000 genomes]
rs56100064	0.86[ASN][1000 genomes]
rs56115408	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56902031	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57530222	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs58160220	0.91[EUR][1000 genomes]
rs58307420	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58416462	1.00[ASN][1000 genomes]
rs58787759	1.00[ASN][1000 genomes]
rs60167783	0.91[EUR][1000 genomes]
rs60624770	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60964596	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61167401	1.00[ASN][1000 genomes]
rs61476700	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61552467	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6987665	1.00[ASN][1000 genomes]
rs7004549	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7009678	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73691161	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691183	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691187	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73691188	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73691189	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73691190	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73691191	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73691194	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73691597	1.00[ASN][1000 genomes]
rs73693106	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73693110	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73693114	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs73693117	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs73693129	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433426	chr8:67859447-67876356	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67873000-67876200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr8:67873000-67876400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr8:67873200-67875600	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:67873200-67876000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
5	chr8:67873200-67876000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
6	chr8:67873200-67876000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
7	chr8:67873200-67876000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
8	chr8:67873400-67875600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr8:67873400-67875600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr8:67873400-67875600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
11	chr8:67873400-67876000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
12	chr8:67873400-67876000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
13	chr8:67873400-67876000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
14	chr8:67873400-67876000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr8:67873600-67875600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
16	chr8:67873600-67875600	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
17	chr8:67873800-67875800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr8:67873800-67875800	Active TSS	Right Atrium	heart
19	chr8:67874000-67875600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr8:67874000-67875600	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
21	chr8:67874000-67875600	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
22	chr8:67874000-67875600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
23	chr8:67874000-67875600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr8:67874000-67875600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr8:67874000-67875600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr8:67874000-67875600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr8:67874000-67875600	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
28	chr8:67874000-67875600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
29	chr8:67874000-67875600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
30	chr8:67874000-67875600	Flanking Bivalent TSS/Enh	NH-A	brain
31	chr8:67874000-67875800	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
32	chr8:67874000-67875800	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
33	chr8:67874000-67875800	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr8:67874000-67875800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr8:67874000-67875800	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr8:67874000-67875800	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
37	chr8:67874200-67875600	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood
38	chr8:67874200-67875600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr8:67874200-67875600	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
40	chr8:67874200-67875600	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
41	chr8:67874200-67875600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
42	chr8:67874200-67875600	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
43	chr8:67874200-67875600	Bivalent/Poised TSS	NHEK	skin
44	chr8:67874200-67875800	Bivalent Enhancer	Fetal Lung	lung
45	chr8:67874400-67875600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr8:67874400-67875800	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
47	chr8:67874600-67875600	Flanking Active TSS	Primary hematopoietic stem cells	blood
48	chr8:67874600-67875800	Bivalent Enhancer	Placenta	Placenta
49	chr8:67874800-67875600	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
50	chr8:67874800-67875600	Bivalent Enhancer	Colon Smooth Muscle	Colon

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